Factsheet for VIT_06s0004g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 1
extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05790.t01
VIT_04s0008g05610.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56360.1	VIT_01s0011g05790.t01	AT1G68060.1	21798944
AT5G56360.1	VIT_04s0008g05610.t01	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50502	Soybean	endoplasmic reticulum	60.34	61.21
KRG89462	Soybean	endoplasmic reticulum	59.72	59.81
PGSC0003DMT400011814	Potato	endoplasmic reticulum	57.52	58.07
AT5G56360.1	Thale cress	endoplasmic reticulum	57.21	56.41
Solyc12g099660.1.1	Tomato	unclear	56.11	56.11
CDY46579	Canola	endoplasmic reticulum	55.64	55.12
CDY32789	Canola	endoplasmic reticulum	55.17	54.91
CDY11931	Canola	endoplasmic reticulum	55.64	54.36
Bra002821.1-P	Field mustard	endoplasmic reticulum	54.39	54.13
Bra028933.1-P	Field mustard	endoplasmic reticulum	54.7	53.61
CDY36796	Canola	endoplasmic reticulum	54.39	53.3
TraesCS3B01G218600.2	Wheat	golgi	49.69	52.4
TraesCS3D01G192900.1	Wheat	endoplasmic reticulum	49.69	52.4
TraesCS3A01G189400.3	Wheat	endoplasmic reticulum	49.37	52.07
Os01t0276800-01	Rice	endoplasmic reticulum	50.0	51.95
HORVU3Hr1G039400.5	Barley	endoplasmic reticulum	49.53	51.3
GSMUA_Achr10P...	Banana	endoplasmic reticulum	22.1	51.09
KXG32260	Sorghum	endoplasmic reticulum	48.9	50.98
Zm00001d040449_P001	Maize	endoplasmic reticulum	21.94	47.46
GSMUA_Achr5P27690_001	Banana	endoplasmic reticulum	49.22	46.11
VIT_12s0028g02620.t01	Wine grape	plasma membrane	12.54	39.02
Zm00001d008236_P004	Maize	endoplasmic reticulum	44.04	38.81

Protein Annotations

EntrezGene:100255312	wikigene:100255312	MapMan:18.1.1.6.2.2	Gene3D:2.70.130.10	ProteinID:CBI16566	ProteinID:CBI16566.3
ncoils:Coil	UniProt:D7SLN8	EMBL:FN594951	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006491
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987
GO:GO:0019538	GO:GO:0042742	InterPro:Glucosidase_2_bsu	InterPro:IPR009011	InterPro:LDrepeatLR_classA_rpt	EntrezGene:LOC100255312
wikigene:LOC100255312	InterPro:Man6P_isomerase_rcpt-bd_dom_sf	PFAM:PF12999	PFAM:PF13015	InterPro:PRKCSH	InterPro:PRKCSH_N
PANTHER:PTHR12630	PANTHER:PTHR12630:SF10	SUPFAM:SSF50911	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001BE0E39
ArrayExpress:VIT_06s0004g00140	EnsemblPlantsGene:VIT_06s0004g00140	EnsemblPlants:VIT_06s0004g00140.t01	unigene:Vvi.4869	RefSeq:XP_002283762	RefSeq:XP_002283762.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:264400..274920

Molecular Weight (calculated)

72579.2 Da

IEP (calculated)

4.466

GRAVY (calculated)

-1.075

Length

638 amino acids

Sequence
(BLAST)

001: MKIYIVIHNL FLILGVLFIS QIGRSASKSL LSTNPFLGIA PQDENYYKTS SEIFKCKDGS KKLNRAQVND DFCDCPDASD EPGTSACPGG KFYCRNAGHV
101: PLLLFSSRVN DGICDCCDGS DEYDGKVKCP NTCWEAGKVA RDKLKKKIVT YKEGVTLRKQ QIEQAKLAIA KEEEELSKLK SEEKILKGLV QQLKDRKEQI
201: EKAEEKERLQ KEEEEKKRRE AEEEANKEKS KAEKEANQEK NEVKEQVGSE EEPMESTHDD KIGVLDQDVE EDKSNSVAEV EHTDKSENAS PTDGIEQHAA
301: EGKEESPVVH ETDLHAGNEV SPTSDQATKQ ENDVAENTEG LSREELGRLV ASRWTGENTG QHTEEVDAVK HDHHESHEET PEDTHAEEYD GYASETDDDS
401: QRYDNDDMED PVDEDFGEDD HYDSSPPYKS DTEDESDFSD ITSTSNPSWL EKIQQTVRNI LNAVNLFQTP VDKSEAAHIR KEYDESSAKL SKMQSRISSL
501: TQKLKHDFGP EKEFYSFYDQ CFESKENKYV YKLCPFKQAS QEEGHSTTRL GRWDKFEDSY RTMLFSNGEK CWNGPDRSLK VKLRCGLKNE VTDVDEPSRC
601: EYVALLSTPA LCLEEKLKEL QQKLELMNQE QPQGRDEL

Best Arabidopsis Sequence Match ( AT5G56360.1 )
(BLAST)

001: MRVVVISSFV SVSLQLSFLL LLASAIRSSS SPPNDPFLGI SPQDEKYYKS SSEIKCKDGS KKFTKAQLND DFCDCSDGTD EPGTSACPTG KFYCRNAGHS
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL

Arabidopsis Description

PSL4Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FM96]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.