Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra004053.1-P | |
| Bra004279.1-P | |
| Bra011328.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56360.1 | Bra004053.1-P | AT1G68060.1 | 21798944 |
| AT5G56360.1 | Bra004279.1-P | AT1G68060.1 | 21798944 |
| AT5G56360.1 | Bra011328.1-P | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11931 | Canola | endoplasmic reticulum | 89.4 | 89.13 |
| AT5G56360.1 | Thale cress | endoplasmic reticulum | 83.1 | 83.62 |
| Bra002821.1-P | Field mustard | endoplasmic reticulum | 80.34 | 81.59 |
| KRH50502 | Soybean | endoplasmic reticulum | 54.07 | 55.96 |
| VIT_06s0004g00140.t01 | Wine grape | endoplasmic reticulum | 53.61 | 54.7 |
| KRG89462 | Soybean | endoplasmic reticulum | 52.53 | 53.69 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 22.43 | 52.9 |
| Solyc12g099660.1.1 | Tomato | unclear | 50.54 | 51.57 |
| PGSC0003DMT400011814 | Potato | endoplasmic reticulum | 49.92 | 51.42 |
| TraesCS3B01G218600.2 | Wheat | golgi | 46.39 | 49.92 |
| Os01t0276800-01 | Rice | endoplasmic reticulum | 46.85 | 49.67 |
| TraesCS3D01G192900.1 | Wheat | endoplasmic reticulum | 46.08 | 49.59 |
| HORVU3Hr1G039400.5 | Barley | endoplasmic reticulum | 46.85 | 49.51 |
| TraesCS3A01G189400.3 | Wheat | endoplasmic reticulum | 45.78 | 49.26 |
| KXG32260 | Sorghum | endoplasmic reticulum | 46.24 | 49.18 |
| Zm00001d040449_P001 | Maize | endoplasmic reticulum | 21.2 | 46.78 |
| GSMUA_Achr5P27690_001 | Banana | endoplasmic reticulum | 45.47 | 43.47 |
| Bra004690.1-P | Field mustard | plasma membrane | 12.75 | 38.25 |
| Zm00001d008236_P004 | Maize | endoplasmic reticulum | 41.94 | 37.71 |
Protein Annotations
| MapMan:18.1.1.6.2.2 | Gene3D:2.70.130.10 | EnsemblPlantsGene:Bra028933 | EnsemblPlants:Bra028933.1 | EnsemblPlants:Bra028933.1-P | ncoils:Coil |
| GO:GO:0006491 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | InterPro:Glucosidase_2_bsu |
| InterPro:IPR009011 | UniProt:M4EJG7 | InterPro:Man6P_isomerase_rcpt-bd_dom_sf | PFAM:PF12999 | PFAM:PF13015 | InterPro:PRKCSH |
| InterPro:PRKCSH_N | PANTHER:PTHR12630 | PANTHER:PTHR12630:SF10 | SUPFAM:SSF50911 | SignalP:SignalP-noTM | UniParc:UPI000253FD96 |
| SEG:seg | : | : | : | : | : |
Description
AT5G56360 (E=3e-245) | calmodulin-binding protein
Coordinates
chrA03:+:5468703..5472813
Molecular Weight (calculated)
73291.7 Da
IEP (calculated)
4.433
GRAVY (calculated)
-1.113
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVVVLPSSL SVSLQLCTLL LLASAIRSSS SPLNDPFLGI SPQDEKFYKS SSEIKCKDGS KRFTKAQLND DFCDCADGTD EPGTSACPNG KFYCRNAGHS
101: PLILFSSRVN DGICEDCCDG SDEYGGNVTC PNTCWEAGKA ARESLKKKIE TYKQGLVVRR KEIEQAKVGL EKDAAELKKL KSEEKILKGL VQQLKERKEE
201: IEKVEEKERL QKEKEEKERK DAELAAQPAK ENSEEKTDGN EKVEGSTAGE EMPGASHDDD YPDEDTYHDE IGNYKDSPTD EEPAAEAEPT SILEEATHTN
301: PADEHVVDTK KESPSSEDPL TDGSQNDGST KKESDEVKKV DDLVSEKKEE LSKEELGRLV ASRWTGEKSD KPAAEADDTP KADDQENHEH TPITPHEVDE
401: DDGFVSDADE DTADEGKYSD HEPEDDSYEE EHRHDSTTSY KSDAEDDLDL SETTTSNPTW LEKIQKTVKS ILQAVNLIQT TPVDKSEADR VRKEYDESSS
501: KLNKIQSRVS SLEKKLKQDF GPEKEFYSFH ARCFESKQGK YTYKVCGYKE ATQEEGYSKT RLGEWEKFEN SYQFMTYTNG DKCWNGPDRS LKIKLRCGLK
601: NELMDVDEPS RCEYAAVLST PARCLEDKLK ELEQKLEKMM SQDQSHSHDE L
101: PLILFSSRVN DGICEDCCDG SDEYGGNVTC PNTCWEAGKA ARESLKKKIE TYKQGLVVRR KEIEQAKVGL EKDAAELKKL KSEEKILKGL VQQLKERKEE
201: IEKVEEKERL QKEKEEKERK DAELAAQPAK ENSEEKTDGN EKVEGSTAGE EMPGASHDDD YPDEDTYHDE IGNYKDSPTD EEPAAEAEPT SILEEATHTN
301: PADEHVVDTK KESPSSEDPL TDGSQNDGST KKESDEVKKV DDLVSEKKEE LSKEELGRLV ASRWTGEKSD KPAAEADDTP KADDQENHEH TPITPHEVDE
401: DDGFVSDADE DTADEGKYSD HEPEDDSYEE EHRHDSTTSY KSDAEDDLDL SETTTSNPTW LEKIQKTVKS ILQAVNLIQT TPVDKSEADR VRKEYDESSS
501: KLNKIQSRVS SLEKKLKQDF GPEKEFYSFH ARCFESKQGK YTYKVCGYKE ATQEEGYSKT RLGEWEKFEN SYQFMTYTNG DKCWNGPDRS LKIKLRCGLK
601: NELMDVDEPS RCEYAAVLST PARCLEDKLK ELEQKLEKMM SQDQSHSHDE L
001: MRVVVISSFV SVSLQLSFLL LLASAIRSSS SPPNDPFLGI SPQDEKYYKS SSEIKCKDGS KKFTKAQLND DFCDCSDGTD EPGTSACPTG KFYCRNAGHS
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL
Arabidopsis Description
PSL4Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FM96]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.