CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05183
KRH15859
KRH41720
KRH49658
KRH60419
KRH70354

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56360.1	KRH41720	AT1G68060.1	21798944
AT5G56360.1	KRH49658	AT1G68060.1	21798944
AT5G56360.1	KRH60419	AT1G68060.1	21798944
AT5G56360.1	KRH70354	AT1G68060.1	21798944
AT5G56360.1	KRH05183	AT4G32190.1	21798944
AT5G56360.1	KRH15859	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50502	Soybean	endoplasmic reticulum	84.14	85.21
VIT_06s0004g00140.t01	Wine grape	endoplasmic reticulum	59.81	59.72
AT5G56360.1	Thale cress	endoplasmic reticulum	56.04	55.18
CDY46579	Canola	endoplasmic reticulum	54.95	54.35
CDY32789	Canola	endoplasmic reticulum	54.0	53.67
PGSC0003DMT400011814	Potato	endoplasmic reticulum	52.9	53.32
TraesCS3B01G218600.2	Wheat	golgi	50.55	53.22
Bra002821.1-P	Field mustard	endoplasmic reticulum	53.53	53.2
TraesCS3D01G192900.1	Wheat	endoplasmic reticulum	50.24	52.89
Solyc12g099660.1.1	Tomato	unclear	52.75	52.66
KXG32260	Sorghum	endoplasmic reticulum	50.55	52.61
TraesCS3A01G189400.3	Wheat	endoplasmic reticulum	49.92	52.56
Bra028933.1-P	Field mustard	endoplasmic reticulum	53.69	52.53
CDY11931	Canola	endoplasmic reticulum	53.85	52.53
HORVU3Hr1G039400.5	Barley	endoplasmic reticulum	50.55	52.27
Os01t0276800-01	Rice	endoplasmic reticulum	50.24	52.12
GSMUA_Achr10P...	Banana	endoplasmic reticulum	22.45	51.81
CDY36796	Canola	endoplasmic reticulum	52.75	51.61
Zm00001d040449_P001	Maize	endoplasmic reticulum	22.45	48.47
GSMUA_Achr5P27690_001	Banana	endoplasmic reticulum	48.98	45.81
Zm00001d008236_P004	Maize	endoplasmic reticulum	45.68	40.19
KRH55830	Soybean	plasma membrane	10.52	35.45
KRH25690	Soybean	plastid	10.36	29.2

Protein Annotations

EntrezGene:100811132	MapMan:18.1.1.6.2.2	Gene3D:2.70.130.10	EMBL:ACUP02012210	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G024500
GO:GO:0006491	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	InterPro:Glucosidase_2_bsu
InterPro:IPR009011	UniProt:K7N0Y5	EnsemblPlants:KRG89462	ProteinID:KRG89462	ProteinID:KRG89462.1	ProteinID:KRG89463.1
InterPro:Man6P_isomerase_rcpt-bd_dom_sf	PFAM:PF12999	PFAM:PF13015	InterPro:PRKCSH	InterPro:PRKCSH_N	PANTHER:PTHR12630
PANTHER:PTHR12630:SF10	SUPFAM:SSF50911	SignalP:SignalP-noTM	UniParc:UPI0002960745	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:+:2661830..2670293

Molecular Weight (calculated)

72479.3 Da

IEP (calculated)

4.319

GRAVY (calculated)

-1.166

Length

637 amino acids

Sequence
(BLAST)

001: MKLLRLRILL IALLLMLCAP FSSSSKPKDP FLGVAPEDDD YYKSSDVISC KDGSGKFTKA QFNDDFCDCA DGTDEPGTSA CPGGKFYCRN AGHSPVYLFS
101: SRVNDGICDC CDGTDEYDGQ VKCPNTCWEA GKVARDRLKK KIATYQEGVK LRKQEIEQAK VAMEKDEAEL SKLKKEESIL KGIVKQLKDH KEQIDKAEEE
201: ERLQKEKEEK QKRESEEKAN EAKDKADEDT EHRNEAEKHS DIEDNTLENN HDKIENLEGS PADQDEAGDK LADVLDDDDD DDDDEASDSH GSEGSLHNKV
301: EENAKEAEEE PIVKSETDIK VRNKESSDEI INKGNDASEN TEGLSREELG RLVASRWTGE NTDKPSAVPD TTLDNEDRED PKGRNNEEYE GYASETDDDN
401: NKYDDDSHKY DDEDEVDDEY REDEHDDLSS SYKSDSDNEP DLSDNPSWLE KIQRTVRNIF QVVNLFQAPV NQTDAARVRK EYDESSAKLS KIQSRISSLK
501: QKLKHDFGPA KEFYSFYDHC FEGKENKYTY KVCPYKQASQ EEGYSNTRLG SWDKFEDSYR VMVFSNGDKC WNGPDRSLKV KLRCGLKNEI TDVDEPSRCE
601: YVAVLSTPTL CQEERLKELQ LKLDLLNSEI PANHDEL

Best Arabidopsis Sequence Match ( AT5G56360.1 )
(BLAST)

001: MRVVVISSFV SVSLQLSFLL LLASAIRSSS SPPNDPFLGI SPQDEKYYKS SSEIKCKDGS KKFTKAQLND DFCDCSDGTD EPGTSACPTG KFYCRNAGHS
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL

Arabidopsis Description

PSL4Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FM96]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.