Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra004053.1-P | |
| Bra004279.1-P | |
| Bra011328.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56360.1 | Bra004053.1-P | AT1G68060.1 | 21798944 |
| AT5G56360.1 | Bra004279.1-P | AT1G68060.1 | 21798944 |
| AT5G56360.1 | Bra011328.1-P | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32789 | Canola | endoplasmic reticulum | 94.85 | 94.85 |
| Bra028933.1-P | Field mustard | endoplasmic reticulum | 81.59 | 80.34 |
| AT5G56360.1 | Thale cress | endoplasmic reticulum | 80.81 | 80.06 |
| KRH50502 | Soybean | endoplasmic reticulum | 54.91 | 55.96 |
| VIT_06s0004g00140.t01 | Wine grape | endoplasmic reticulum | 54.13 | 54.39 |
| KRG89462 | Soybean | endoplasmic reticulum | 53.2 | 53.53 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 22.62 | 52.54 |
| PGSC0003DMT400011814 | Potato | endoplasmic reticulum | 51.33 | 52.06 |
| Solyc12g099660.1.1 | Tomato | unclear | 51.64 | 51.88 |
| Os01t0276800-01 | Rice | endoplasmic reticulum | 48.52 | 50.65 |
| TraesCS3B01G218600.2 | Wheat | golgi | 47.27 | 50.08 |
| KXG32260 | Sorghum | endoplasmic reticulum | 47.58 | 49.84 |
| HORVU3Hr1G039400.5 | Barley | endoplasmic reticulum | 47.74 | 49.68 |
| TraesCS3A01G189400.3 | Wheat | endoplasmic reticulum | 46.8 | 49.59 |
| TraesCS3D01G192900.1 | Wheat | endoplasmic reticulum | 46.8 | 49.59 |
| Zm00001d040449_P001 | Maize | endoplasmic reticulum | 22.46 | 48.81 |
| GSMUA_Achr5P27690_001 | Banana | endoplasmic reticulum | 47.11 | 44.35 |
| Bra004690.1-P | Field mustard | plasma membrane | 12.95 | 38.25 |
| Zm00001d008236_P004 | Maize | endoplasmic reticulum | 43.06 | 38.12 |
Protein Annotations
| MapMan:18.1.1.6.2.2 | Gene3D:2.70.130.10 | EnsemblPlantsGene:Bra002821 | EnsemblPlants:Bra002821.1 | EnsemblPlants:Bra002821.1-P | ncoils:Coil |
| GO:GO:0006491 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | InterPro:Glucosidase_2_bsu |
| InterPro:IPR009011 | UniProt:M4CF39 | InterPro:Man6P_isomerase_rcpt-bd_dom_sf | PFAM:PF12999 | PFAM:PF13015 | InterPro:PRKCSH |
| InterPro:PRKCSH_N | PANTHER:PTHR12630 | PANTHER:PTHR12630:SF10 | SUPFAM:SSF50911 | SignalP:SignalP-noTM | UniParc:UPI0002544A1B |
| SEG:seg | : | : | : | : | : |
Description
AT5G56360 (E=9e-257) | calmodulin-binding protein
Coordinates
chrA10:-:7353714..7357659
Molecular Weight (calculated)
72336.5 Da
IEP (calculated)
4.383
GRAVY (calculated)
-1.143
Length
641 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVLLSFLLL LLASSAIRSS SSPVTDDPFL GISPLDEKYY KSSSEIKCKD GSKRFTRAQL NDDFCDCADG TDEPGTSACP NGKFYCRNAG HSPLVLFSSR
101: VNDGICDCCD GSDEYDGIVT CSNTCWEAGK AARENLKKKI DTYNQGVVIR RKEIEQAKVG LEKDEAELKK LKSEEKILKG LVQQLKERKE QIEKIGEKDR
201: LEKEKEEKER KEAELAAQPG NGTSEEKTDD NGKVEGSTAG EEMPGVSQDD EILDENEHHD ETGRYKDLDT DEEPAAEAEP TSVLEEGTHT NPANQHVVET
301: KEESPSSEDL ITAGSQHDGS TKKEESDEVK KEEDIVSEKK EELSKEELGR LVASRWTGEK SDTPSEADED SKADDHENHD HTPTSPQEVE EDDGFVSDGD
401: EETGDDGKYS DHEPEDDTYE EEYRHDSTSS YKSDGEDDLD LSETTSSPTW LEKIQKTVKN ILQAVNLFQT TPVDKSEADR VRKEYDESSS KLKKIQSRVS
501: SLEKKLKQDF GPEKEFYSFH GRCFESKQGK YTYKVCAYKE ATQEEGYSKT QLGGWEKFEN SYQFMTYTNG DKCWNGPDRS LKIKLRCGLK NELMDVDEPS
601: RCEYAAVLST PARCLEDKLK ELQEKLEKLM NQDQPQKHDE L
101: VNDGICDCCD GSDEYDGIVT CSNTCWEAGK AARENLKKKI DTYNQGVVIR RKEIEQAKVG LEKDEAELKK LKSEEKILKG LVQQLKERKE QIEKIGEKDR
201: LEKEKEEKER KEAELAAQPG NGTSEEKTDD NGKVEGSTAG EEMPGVSQDD EILDENEHHD ETGRYKDLDT DEEPAAEAEP TSVLEEGTHT NPANQHVVET
301: KEESPSSEDL ITAGSQHDGS TKKEESDEVK KEEDIVSEKK EELSKEELGR LVASRWTGEK SDTPSEADED SKADDHENHD HTPTSPQEVE EDDGFVSDGD
401: EETGDDGKYS DHEPEDDTYE EEYRHDSTSS YKSDGEDDLD LSETTSSPTW LEKIQKTVKN ILQAVNLFQT TPVDKSEADR VRKEYDESSS KLKKIQSRVS
501: SLEKKLKQDF GPEKEFYSFH GRCFESKQGK YTYKVCAYKE ATQEEGYSKT QLGGWEKFEN SYQFMTYTNG DKCWNGPDRS LKIKLRCGLK NELMDVDEPS
601: RCEYAAVLST PARCLEDKLK ELQEKLEKLM NQDQPQKHDE L
001: MRVVVISSFV SVSLQLSFLL LLASAIRSSS SPPNDPFLGI SPQDEKYYKS SSEIKCKDGS KKFTKAQLND DFCDCSDGTD EPGTSACPTG KFYCRNAGHS
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL
Arabidopsis Description
PSL4Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FM96]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.