Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 6
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56360.1 | GSMUA_AchrUn_... | AT4G32190.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d040449_P001 | Maize | endoplasmic reticulum | 48.19 | 45.08 |
| GSMUA_Achr4P02770_001 | Banana | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane | 26.81 | 34.58 |
| TraesCS3D01G192900.1 | Wheat | endoplasmic reticulum | 54.71 | 24.96 |
| TraesCS3B01G218600.2 | Wheat | golgi | 54.71 | 24.96 |
| TraesCS3A01G189400.3 | Wheat | endoplasmic reticulum | 53.99 | 24.63 |
| GSMUA_Achr5P27690_001 | Banana | endoplasmic reticulum | 60.51 | 24.52 |
| HORVU3Hr1G039400.5 | Barley | endoplasmic reticulum | 54.71 | 24.51 |
| KXG32260 | Sorghum | endoplasmic reticulum | 53.99 | 24.35 |
| Os01t0276800-01 | Rice | endoplasmic reticulum | 52.9 | 23.78 |
| PGSC0003DMT400011814 | Potato | endoplasmic reticulum | 53.26 | 23.26 |
| Solyc12g099660.1.1 | Tomato | unclear | 53.62 | 23.2 |
| CDY32789 | Canola | endoplasmic reticulum | 52.9 | 22.78 |
| AT5G56360.1 | Thale cress | endoplasmic reticulum | 53.26 | 22.72 |
| Bra002821.1-P | Field mustard | endoplasmic reticulum | 52.54 | 22.62 |
| KRH50502 | Soybean | endoplasmic reticulum | 51.45 | 22.58 |
| CDY11931 | Canola | endoplasmic reticulum | 53.26 | 22.51 |
| KRG89462 | Soybean | endoplasmic reticulum | 51.81 | 22.45 |
| Bra028933.1-P | Field mustard | endoplasmic reticulum | 52.9 | 22.43 |
| CDY46579 | Canola | endoplasmic reticulum | 51.81 | 22.2 |
| CDY36796 | Canola | endoplasmic reticulum | 52.17 | 22.12 |
| VIT_06s0004g00140.t01 | Wine grape | endoplasmic reticulum | 51.09 | 22.1 |
| Zm00001d008236_P004 | Maize | endoplasmic reticulum | 50.36 | 19.2 |
| GSMUA_Achr10P... | Banana | nucleus | 8.7 | 7.59 |
Protein Annotations
| MapMan:18.1.1.6.2.2 | Gene3D:4.10.400.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006491 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr10G05100_001 |
| EnsemblPlants:GSMUA_Achr10P05100_001 | EnsemblPlants:GSMUA_Achr10T05100_001 | InterPro:Glucosidase_2_bsu | InterPro:LDL_receptor-like_sf | InterPro:LDrepeatLR_classA_rpt | UniProt:M0RFI7 |
| PFAM:PF12999 | InterPro:PRKCSH_N | PFscan:PS50068 | PFscan:PS51257 | PANTHER:PTHR12630 | PANTHER:PTHR12630:SF10 |
| SUPFAM:SSF57424 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0002951AC1 | SEG:seg | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G05100_001]
Coordinates
chr10:+:14720186..14722830
Molecular Weight (calculated)
31264.0 Da
IEP (calculated)
5.181
GRAVY (calculated)
-0.649
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTHLLLPVS LAISCLCLSW ISGLASLPPR ELLGIAPEDE NFYKSDVIKC KDGSKKFTKQ QLNDDFCDCL DGTDEPGTSA CPEGKFYCRN PGHIPQMIYS
101: SRVNDGICDC CDGSDEYKGN VNCPNTCWEA GKAVCEKLKK KIATHQDGLV IRKREVEKAK QAFAKDEEEL SKLKSEEKIL KGLVDKLREH KEQIEKAEEE
201: ERLKEEEEKK QRDAERQSTE QNKSLEESPL DHSEGTHDTL LETTSQVNLT FKISLLLHFA VCTSINLISL SYHYLF
101: SRVNDGICDC CDGSDEYKGN VNCPNTCWEA GKAVCEKLKK KIATHQDGLV IRKREVEKAK QAFAKDEEEL SKLKSEEKIL KGLVDKLREH KEQIEKAEEE
201: ERLKEEEEKK QRDAERQSTE QNKSLEESPL DHSEGTHDTL LETTSQVNLT FKISLLLHFA VCTSINLISL SYHYLF
001: MRVVVISSFV SVSLQLSFLL LLASAIRSSS SPPNDPFLGI SPQDEKYYKS SSEIKCKDGS KKFTKAQLND DFCDCSDGTD EPGTSACPTG KFYCRNAGHS
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL
Arabidopsis Description
PSL4Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FM96]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.