Factsheet for PGSC0003DMT400011814

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010993
PGSC0003DMT400051425
PGSC0003DMT400056068
PGSC0003DMT400075913

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56360.1	PGSC0003DMT400051425	AT1G68060.1	21798944
AT5G56360.1	PGSC0003DMT400056068	AT1G68060.1	21798944
AT5G56360.1	PGSC0003DMT400075913	AT1G68060.1	21798944
AT5G56360.1	PGSC0003DMT400010993	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099660.1.1	Tomato	unclear	86.87	86.05
VIT_06s0004g00140.t01	Wine grape	endoplasmic reticulum	58.07	57.52
KRH50502	Soybean	endoplasmic reticulum	55.06	55.33
GSMUA_Achr10P...	Banana	endoplasmic reticulum	23.26	53.26
KRG89462	Soybean	endoplasmic reticulum	53.32	52.9
AT5G56360.1	Thale cress	endoplasmic reticulum	54.11	52.86
CDY32789	Canola	endoplasmic reticulum	53.16	52.42
CDY46579	Canola	endoplasmic reticulum	53.01	52.02
Bra002821.1-P	Field mustard	endoplasmic reticulum	52.06	51.33
CDY11931	Canola	endoplasmic reticulum	52.22	50.54
CDY36796	Canola	endoplasmic reticulum	51.42	49.92
Bra028933.1-P	Field mustard	endoplasmic reticulum	51.42	49.92
Os01t0276800-01	Rice	endoplasmic reticulum	45.41	46.74
TraesCS3B01G218600.2	Wheat	golgi	44.46	46.45
KXG32260	Sorghum	endoplasmic reticulum	44.94	46.41
TraesCS3D01G192900.1	Wheat	endoplasmic reticulum	44.3	46.28
TraesCS3A01G189400.3	Wheat	endoplasmic reticulum	43.99	45.95
HORVU3Hr1G039400.5	Barley	endoplasmic reticulum	44.3	45.45
Zm00001d040449_P001	Maize	endoplasmic reticulum	20.73	44.41
GSMUA_Achr5P27690_001	Banana	endoplasmic reticulum	46.68	43.32
PGSC0003DMT400027390	Potato	endoplasmic reticulum, plasma membrane	11.55	36.32
Zm00001d008236_P004	Maize	endoplasmic reticulum	40.19	35.08

Protein Annotations

EntrezGene:102601829	MapMan:18.1.1.6.2.2	Gene3D:2.70.130.10	Gene3D:4.10.400.10	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0006491	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605
GO:GO:0009607	GO:GO:0009987	GO:GO:0019538	GO:GO:0042742	InterPro:Glucosidase_2_bsu	InterPro:IPR009011
InterPro:LDL_receptor-like_sf	InterPro:LDrepeatLR_classA_rpt	UniProt:M1A082	InterPro:Man6P_isomerase_rcpt-bd_dom_sf	PFAM:PF12999	PFAM:PF13015
EnsemblPlantsGene:PGSC0003DMG400004640	PGSC:PGSC0003DMG400004640	EnsemblPlants:PGSC0003DMT400011814	InterPro:PRKCSH	InterPro:PRKCSH_N	PANTHER:PTHR12630
PANTHER:PTHR12630:SF10	SUPFAM:SSF50911	SUPFAM:SSF57424	SignalP:SignalP-noTM	UniParc:UPI0002954CA2	RefSeq:XP_006349805.1
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400004640]

Coordinates

chr12:+:60279759..60288625

Molecular Weight (calculated)

72117.4 Da

IEP (calculated)

4.462

GRAVY (calculated)

-1.065

Length

632 amino acids

Sequence
(BLAST)

001: MELRFQFVFL LSCIFCICSI DRSVSLPSIV NLGIAPEDEN YYKGLSSGAI NCKDGSKKFT KAQLNDDFCD CPDGSDEPGT SACPSGKFYC KNAGHAPLFI
101: YSSRVNDGIC DCCDGSDEHD GKVKCPNTCW EVGRVARDKL KKKIATFQEG IIIRKKEIEE AKLAIAKEET EVSKLKNEQK ILKGRVEQLQ DKKEQIEKVE
201: EEERLKREKE EKERKEADDA KLEASKVEEK TEVHEEAVKS DIHDKIGLLE DSPPVKDVVE GHDKAADEEQ HGDHSVKDEF PVDEVEQVPE DSSQHPEIKE
301: ASTNNNKADV SSRNEEKDAA ENIESLSKEE LGRVIGSRWL GKKSEQETES VEAGTDSNHD NHDEVPSDTH EEEYHGYDSD VDDRKYDDEH KYDDDENKYD
401: DDDNEDHVED SVGEDHDSSS SYKSESDDDS DFADTTTTTS PSWTEKIQQT VKRIFRSVNL FQTPVNISDA NCIRKEYDEA SAKLTKIESR LSSLKQKLKH
501: DFGPEKEFYS FHGQCFESKE NKYTYKICPF KEATQVEGYS TTRLGNWDKF EDSYRTMQFT NGDHCWNGPN RSVKVKLRCG LKNEVTDIDE PSRCEYLAFL
601: STPALCLEEK LKELQDKLEM MNREQPQDHD EL

Best Arabidopsis Sequence Match ( AT5G56360.1 )
(BLAST)

001: MRVVVISSFV SVSLQLSFLL LLASAIRSSS SPPNDPFLGI SPQDEKYYKS SSEIKCKDGS KKFTKAQLND DFCDCSDGTD EPGTSACPTG KFYCRNAGHS
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL

Arabidopsis Description

PSL4Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FM96]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.