CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68825
CDX75227
CDX81487
CDX81488
CDX81489
CDX96050
CDY01879
CDY04200
CDY07403
CDY61790
CDY61791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56360.1	CDX96050	AT1G68060.1	21798944
AT5G56360.1	CDY01879	AT1G68060.1	21798944
AT5G56360.1	CDY04200	AT1G68060.1	21798944
AT5G56360.1	CDY07403	AT1G68060.1	21798944
AT5G56360.1	CDX68825	AT4G32190.1	21798944
AT5G56360.1	CDX75227	AT4G32190.1	21798944
AT5G56360.1	CDX81487	AT4G32190.1	21798944
AT5G56360.1	CDX81488	AT4G32190.1	21798944
AT5G56360.1	CDX81489	AT4G32190.1	21798944
AT5G56360.1	CDY61790	AT4G32190.1	21798944
AT5G56360.1	CDY61791	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028933.1-P	Field mustard	endoplasmic reticulum	89.13	89.4
CDY36796	Canola	endoplasmic reticulum	89.13	89.4
CDY32789	Canola	endoplasmic reticulum	81.16	82.68
AT5G56360.1	Thale cress	endoplasmic reticulum	81.78	82.53
CDY46579	Canola	endoplasmic reticulum	79.02	80.12
KRH50502	Soybean	endoplasmic reticulum	54.52	56.6
VIT_06s0004g00140.t01	Wine grape	endoplasmic reticulum	54.36	55.64
KRG89462	Soybean	endoplasmic reticulum	52.53	53.85
GSMUA_Achr10P...	Banana	endoplasmic reticulum	22.51	53.26
PGSC0003DMT400011814	Potato	endoplasmic reticulum	50.54	52.22
Solyc12g099660.1.1	Tomato	unclear	50.38	51.57
Os01t0276800-01	Rice	endoplasmic reticulum	48.24	51.3
TraesCS3B01G218600.2	Wheat	golgi	47.17	50.91
HORVU3Hr1G039400.5	Barley	endoplasmic reticulum	47.78	50.65
TraesCS3D01G192900.1	Wheat	endoplasmic reticulum	46.71	50.41
KXG32260	Sorghum	endoplasmic reticulum	47.17	50.33
TraesCS3A01G189400.3	Wheat	endoplasmic reticulum	46.55	50.25
Zm00001d040449_P001	Maize	endoplasmic reticulum	22.05	48.81
GSMUA_Achr5P27690_001	Banana	endoplasmic reticulum	45.02	43.17
CDY64519	Canola	extracellular, plasma membrane	13.32	39.91
Zm00001d008236_P004	Maize	endoplasmic reticulum	42.73	38.54

Protein Annotations

MapMan:18.1.1.6.2.2	Gene3D:2.70.130.10	Gene3D:4.10.400.10	GO:A0A078FF73	UniProt:A0A078FF73	EnsemblPlants:CDY11931
ProteinID:CDY11931	ProteinID:CDY11931.1	ncoils:Coil	GO:GO:0006491	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00060777001	InterPro:Glucosidase_2_bsu	InterPro:IPR009011	InterPro:Man6P_isomerase_rcpt-bd_dom_sf
PFAM:PF12999	PFAM:PF13015	InterPro:PRKCSH	InterPro:PRKCSH_N	PANTHER:PTHR12630	PANTHER:PTHR12630:SF10
SUPFAM:SSF50911	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE4D3C	SEG:seg	:

Description

BnaC03g13570DBnaC03g13570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FF73]

Coordinates

chrLK032015:+:501774..506110

Molecular Weight (calculated)

73523.1 Da

IEP (calculated)

4.435

GRAVY (calculated)

-1.110

Length

653 amino acids

Sequence
(BLAST)

001: MRVVALSSSV SLCLLLSLLL LLASAIRSSS SPLNDPFLGI SPQDEKYYKS SSEIKCKDGS KRFTKAQLND DFCDCADGTD EPGTSACPNG KFYCRNAGHS
101: PLVLFSSRVN DGICDCCDGS DEYGGNVTCP NTCWEAGKAA RESLKKKIET YKQGLVVRRK EIEQAKVGLE KDAAELKKLK SEEKILKGLV QQLKERKEEI
201: EKVEEKERLQ KEKEEKERKD AELAAHPGKG DGEEKKTDDN EKVDGGTDGA EMPGASQDQD DDYPDEDTHH DEIGNYKDFP TDEEPAAEAE PTSILEEATH
301: TNPPDEHIVD TKKESPSSED SLTDGSQNDA STKREESDEV KKVDDLVSEK KEELSKEELG RLVASRWTGE KSDKPAEADD IPKADDQESH EHTPITPHEV
401: DEDDGFVSDG DEDTADEGKY SDHEPEDDSY EEEHRHDSTS SYKSDAEDDL DLSETTTSNP TWLEKIQKTV KSILQAVNLI QTTPVDKLEA DRVRKEYDES
501: SSKLNKIQSR VSSLEKKLKQ DFGPEKEFYS FHGRCFESKQ GKYTYKVCGY KEATQEEGYS KTRLGEWEKF ENSYQFMTYT NGDKCWNGPD RSLKIKLRCG
601: LKNELMDVDE PSRCEYAAVL STPARCLEDK LKELEQKLEK MMSQDQPHSH DEL

Best Arabidopsis Sequence Match ( AT5G56360.1 )
(BLAST)

001: MRVVVISSFV SVSLQLSFLL LLASAIRSSS SPPNDPFLGI SPQDEKYYKS SSEIKCKDGS KKFTKAQLND DFCDCSDGTD EPGTSACPTG KFYCRNAGHS
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL

Arabidopsis Description

PSL4Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FM96]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.