CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02176
CDY23090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68060.1	CDY02176	AT5G61010.1	21798944
AT1G68060.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96050	Canola	nucleus, plastid	97.76	97.6
CDX84402	Canola	cytosol	8.97	91.8
CDY07403	Canola	nucleus, plastid	90.87	91.75
CDY04200	Canola	plastid	88.62	89.63
AT1G68060.1	Thale cress	nucleus, plastid	87.98	88.26
CDX84971	Canola	cytosol	82.69	83.9
CDY27573	Canola	nucleus, plastid	83.65	83.39
CDY36126	Canola	nucleus	81.25	82.17
CDY40783	Canola	plastid	80.61	82.06
CDY03865	Canola	nucleus	80.13	81.17
CDX95377	Canola	cytosol	7.85	77.78
KRH49658	Soybean	cytosol	74.84	76.43
KRH70354	Soybean	endoplasmic reticulum	74.68	76.14
KRH41720	Soybean	cytosol	73.72	74.68
KRH60419	Soybean	cytosol, plastid	73.4	74.35
VIT_01s0011g05790.t01	Wine grape	cytosol	75.64	74.1
PGSC0003DMT400075913	Potato	cytosol	73.24	74.07
Solyc04g008040.2.1	Tomato	nucleus	73.08	73.91
PGSC0003DMT400056068	Potato	cytosol	72.6	72.83
Solyc01g005330.2.1	Tomato	cytosol	72.6	72.83
PGSC0003DMT400051425	Potato	cytosol, nucleus, plasma membrane	72.6	72.6
CDY51769	Canola	nucleus	69.87	72.43
CDY45293	Canola	nucleus	69.71	72.38
Solyc05g017980.2.1	Tomato	cytosol	72.12	72.35
CDY33736	Canola	nucleus	69.55	71.74
CDX81676	Canola	plastid	67.95	71.62
TraesCS6D01G278500.1	Wheat	cytosol	68.75	71.62
Os02t0736100-01	Rice	cytosol	68.59	71.45
CDX95376	Canola	cytosol	7.05	70.97
TraesCS6B01G328200.1	Wheat	cytosol	65.38	70.96
TraesCS6A01G298800.1	Wheat	cytosol	67.79	70.62
CDY17639	Canola	nucleus, plastid	69.87	69.98
CDY36256	Canola	nucleus, plastid	69.71	69.94
TraesCS7D01G204000.1	Wheat	nucleus	67.31	69.19
TraesCS7A01G200700.1	Wheat	nucleus	67.15	69.03
TraesCS7B01G107500.1	Wheat	nucleus	67.15	69.03
EER89530	Sorghum	nucleus	66.67	68.65
EES07297	Sorghum	cytosol	64.74	68.47
Zm00001d037291_P001	Maize	nucleus	66.19	68.15
Zm00001d044724_P001	Maize	cytosol	65.87	67.82
Os06t0251700-01	Rice	nucleus	66.03	67.76
Zm00001d017961_P003	Maize	cytosol	63.94	67.63
CDY24415	Canola	nucleus	27.56	67.45
HORVU7Hr1G041170.1	Barley	nucleus	66.83	67.26
HORVU0Hr1G017080.1	Barley	nucleus, plastid	67.79	62.76
CDY35590	Canola	cytosol	38.62	46.89
CDY42967	Canola	cytosol, nucleus, plasma membrane	37.5	46.8
CDX90483	Canola	cytosol	37.18	46.12
CDY09638	Canola	cytosol	36.86	45.73

Protein Annotations

EnsemblPlants:CDY01879	EnsemblPlantsGene:GSBRNA2T00113065001	GO:A0A078EMC3	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007010	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:MAP70
ncoils:Coil	PANTHER:PTHR31246	PANTHER:PTHR31246:SF2	PFAM:PF07058	ProteinID:CDY01879	ProteinID:CDY01879.1
SEG:seg	UniParc:UPI0004EE7697	MapMan:35.1	:	:	:

Description

BnaC06g29190D

Coordinates

chrLK031929:-:1021809..1025045

Molecular Weight (calculated)

69534.0 Da

IEP (calculated)

9.136

GRAVY (calculated)

-0.872

Length

624 amino acids

Sequence
(BLAST)

001: MTDVTTDGGF SAETPYPSLT ASASYKDTSS GGGGKTSSRR RPIRPSFDAA TDNNEFITQL HGSDPVKVEL NRLENEVRDK DRELGEAHAE IKALRLSERQ
101: REKAVEELTD ELTKLEEKLK LTESLLQGRN LEIKKINEEK KASMVAQFAA EATLRRVHAA QKDDDMPPIE AILAPLEAEL KLARSEIGKL QEDNRALDRL
201: TKSKEAALLD AERTIQTAMA KAALVDDLQN KNQELMKQIE ICQEENKILD KMHRQKVAEV EKLTQTVREL EEAVLAGGAA ANAVRDYQRK FQEMNEERKT
301: LDRELARAKV TANRVATVVA NEWKDGNDKV MPVKQWLEER RFLQGEMQQL RDKLAISDRA AKSEAQLKEK FQLRLKVLEE TLRGTSSSSV RNTPEGRSMS
401: NGPSRRQSLC GADNLQKFGS NGFLPKKSSS SQMRNAFTSN STSVLKNAKG TSRSFDGGTR SLDRGKALLN GPGKYSFNKA CDEAKESESS PNAWKEDSEE
501: KSPSELPAPT TEDNVPGVLY DLLQKEVVAL RKSSHEKDQS LKDKDDAIEM LAKKVETLTK AMEVEAKKMR REVAAMEKEV AAMRVDKDHD NRAKRSSNTK
601: NPSNTAQILT GRAAGRSGLT RSTQ

Best Arabidopsis Sequence Match ( AT1G68060.1 )
(BLAST)

001: MSDVSADGGF LSAEQATTPV AIPTPYPSLT VSASYKEKSS GRRRPVRPSF DAAADNEFIT LLHGSDPVKV ELNRLENEVR DKDRELSEAN AEIKALRLSE
101: RQREKACEEL TDELAKLDGK LKLTESLLQS KNLEIKKINE EKKASMAAQF AAEATLRRVH AAQKDDDMPP IEAILAPLEA ELKLARSEIG KLQEDNRALD
201: RLTKSKEAAL LDAERTVETA LAKAALVDDL QNKNQELMKQ IEICQEENKI LDRMHRQKVA EVEKLTQTVR ELEEAVLAGG AAANAVRDYQ RKFQEMNEER
301: KTLDRELARA KVTANRVATV VANEWKDGND KVMPVKQWLE ERRFLQGEMQ QLRDKLAISD RAAKSEAQLK DKFQLRLRVL EETLRGTSSI SIRNTPEGRS
401: MSNGPSRRQS IGGSDNLQKF ASNGFLSKKT PMRNSFTSNS TSVLKNAKGT SKSFDGGTRS LDRGKALLKG PGNYSFNKAC DETKESESPN TWKEDSEEKP
501: PSELPAPATE DNVPGVLYDL LQKEVVALRK SSHEKDQSLK DKDDAIEMLA KKVETLTKAM EVEAKKMRRE VAAMEKEVAA MRVDKDQDNR AKRSSNTKPS
601: SNTAQILAAR AAGRSGLTRS TQ

Arabidopsis Description

MAP70.1Microtubule-associated protein 70-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9X0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.