Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g115070.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68060.1 | Solyc03g115070.1.1 | AT5G61010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075913 | Potato | cytosol | 98.06 | 98.06 |
| Solyc01g005330.2.1 | Tomato | cytosol | 83.31 | 82.64 |
| Solyc05g017980.2.1 | Tomato | cytosol | 81.2 | 80.55 |
| KRH70354 | Soybean | endoplasmic reticulum | 79.74 | 80.39 |
| KRH49658 | Soybean | cytosol | 79.58 | 80.36 |
| KRH60419 | Soybean | cytosol, plastid | 79.74 | 79.87 |
| KRH41720 | Soybean | cytosol | 79.25 | 79.38 |
| VIT_01s0011g05790.t01 | Wine grape | cytosol | 80.06 | 77.55 |
| CDX84971 | Canola | cytosol | 74.88 | 75.12 |
| CDY07403 | Canola | nucleus, plastid | 75.04 | 74.92 |
| CDY40783 | Canola | plastid | 74.23 | 74.71 |
| CDY27573 | Canola | nucleus, plastid | 75.53 | 74.44 |
| Bra004053.1-P | Field mustard | nucleus, plastid | 74.39 | 74.27 |
| CDY04200 | Canola | plastid | 74.23 | 74.23 |
| CDX96050 | Canola | nucleus, plastid | 75.04 | 74.08 |
| Bra004279.1-P | Field mustard | nucleus, plastid | 75.04 | 74.08 |
| Bra012493.1-P | Field mustard | nucleus | 73.58 | 74.06 |
| TraesCS6D01G278500.1 | Wheat | cytosol | 71.8 | 73.96 |
| AT1G68060.1 | Thale cress | nucleus, plastid | 74.39 | 73.79 |
| CDY03865 | Canola | nucleus | 73.58 | 73.7 |
| CDY01879 | Canola | nucleus | 73.91 | 73.08 |
| TraesCS6B01G328200.1 | Wheat | cytosol | 68.07 | 73.04 |
| AT1G14840.1 | Thale cress | plastid | 71.47 | 73.01 |
| Bra032784.1-P | Field mustard | nucleus | 70.5 | 72.99 |
| TraesCS6A01G298800.1 | Wheat | cytosol | 70.66 | 72.79 |
| Bra010978.1-P | Field mustard | nucleus | 71.96 | 72.67 |
| Os02t0736100-01 | Rice | cytosol | 70.34 | 72.45 |
| CDX81676 | Canola | plastid | 68.88 | 71.79 |
| CDY33736 | Canola | nucleus | 70.02 | 71.41 |
| Bra026800.1-P | Field mustard | nucleus | 69.37 | 71.21 |
| CDY36126 | Canola | nucleus | 71.15 | 71.15 |
| Bra026184.1-P | Field mustard | nucleus | 68.72 | 71.14 |
| Bra025859.1-P | Field mustard | nucleus | 52.19 | 71.08 |
| CDY45293 | Canola | nucleus | 69.21 | 71.05 |
| CDY51769 | Canola | nucleus | 69.21 | 70.93 |
| EER89530 | Sorghum | nucleus | 69.37 | 70.63 |
| Zm00001d044724_P001 | Maize | cytosol | 69.04 | 70.3 |
| EES07297 | Sorghum | cytosol | 67.1 | 70.17 |
| CDY17639 | Canola | nucleus, plastid | 70.83 | 70.14 |
| TraesCS7B01G107500.1 | Wheat | nucleus | 68.88 | 70.02 |
| TraesCS7D01G204000.1 | Wheat | nucleus | 68.72 | 69.85 |
| TraesCS7A01G200700.1 | Wheat | nucleus | 68.56 | 69.69 |
| AT2G01750.2 | Thale cress | nucleus | 71.15 | 69.68 |
| Zm00001d037291_P001 | Maize | nucleus | 68.4 | 69.64 |
| Solyc12g021250.1.1 | Tomato | cytosol | 15.23 | 69.63 |
| Os06t0251700-01 | Rice | nucleus | 68.56 | 69.57 |
| Zm00001d017961_P003 | Maize | cytosol | 66.45 | 69.49 |
| Bra024854.1-P | Field mustard | nucleus, plastid | 70.83 | 69.37 |
| CDY36256 | Canola | nucleus, plastid | 69.53 | 68.97 |
| HORVU7Hr1G041170.1 | Barley | nucleus | 68.23 | 67.9 |
| AT1G24764.3 | Thale cress | endoplasmic reticulum, extracellular | 74.72 | 66.52 |
| HORVU0Hr1G017080.1 | Barley | nucleus, plastid | 70.18 | 64.24 |
| CDY24415 | Canola | nucleus | 23.18 | 56.08 |
| Solyc04g015010.2.1 | Tomato | cytosol | 41.65 | 52.77 |
| Solyc11g012660.1.1 | Tomato | nucleus | 42.95 | 47.32 |
Protein Annotations
| EnsemblPlants:Solyc04g008040.2.1 | EnsemblPlantsGene:Solyc04g008040.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007010 |
| GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:MAP70 | ncoils:Coil |
| PANTHER:PTHR31246 | PANTHER:PTHR31246:SF2 | PFAM:PF07058 | SEG:seg | UniParc:UPI0002766D82 | UniProt:K4BNW0 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:1700710..1706396
Molecular Weight (calculated)
69265.0 Da
IEP (calculated)
9.605
GRAVY (calculated)
-0.874
Length
617 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVSGDNSY NVRQPTSDTA GYTTPLTVSA SFKEGKTYRR RTSMRPSLDA DEFLNLLHGS DPVKLELNRL ENELRDKDRE LSEAQAEIKS LRLSERLREK
101: AVEELTDEWS RVDEKLKLTE SLLESKNLEI KKINEEKKAS MAAQFAAEAT LRRVHAAQKD DDMPPIEAIL APLEAELKLA RQEIAKLQDD NKALDRLTKS
201: KEAALLDAER TVQSALAKAS MVDDLQNKNQ DLMKQIEICQ EENKILDRMH RQKVAEVEKL TQTVRELEEA VLAGGAAANA VRDYQRKVQE MNEERKTLDR
301: ELARAKVTAN RVATVVANEW KDASDKVMPV KQWLEERKFL QGELQQLRDK LAISERTAKS EAQLKEKYHL RLKVLEETLK STSTGARTIP DGRSSSNGPS
401: RRRSLGGADN ISKLTSNGIL PKRSPSFQLR SSGASTVLKH AKGTSKSFDG GSRSLDRSKK LLNGTGPNFN SSKSCDVSKD NETESNSWKA NQDEKHNDSQ
501: MARTEDTVPG VLYDLLQKEV IALRKAGHEK DQSLNDKDDA IEMLAKKVET LTKAMEVEAK KMRREVAAME KEVSAMRVEK EQENRAKRFA NSKGPVNSSQ
601: PLPGRNVARN GLMRGTQ
101: AVEELTDEWS RVDEKLKLTE SLLESKNLEI KKINEEKKAS MAAQFAAEAT LRRVHAAQKD DDMPPIEAIL APLEAELKLA RQEIAKLQDD NKALDRLTKS
201: KEAALLDAER TVQSALAKAS MVDDLQNKNQ DLMKQIEICQ EENKILDRMH RQKVAEVEKL TQTVRELEEA VLAGGAAANA VRDYQRKVQE MNEERKTLDR
301: ELARAKVTAN RVATVVANEW KDASDKVMPV KQWLEERKFL QGELQQLRDK LAISERTAKS EAQLKEKYHL RLKVLEETLK STSTGARTIP DGRSSSNGPS
401: RRRSLGGADN ISKLTSNGIL PKRSPSFQLR SSGASTVLKH AKGTSKSFDG GSRSLDRSKK LLNGTGPNFN SSKSCDVSKD NETESNSWKA NQDEKHNDSQ
501: MARTEDTVPG VLYDLLQKEV IALRKAGHEK DQSLNDKDDA IEMLAKKVET LTKAMEVEAK KMRREVAAME KEVSAMRVEK EQENRAKRFA NSKGPVNSSQ
601: PLPGRNVARN GLMRGTQ
001: MSDVSGDGDL SATVTEHEVT PQPPVSSATY PSLTVSASYK ESSGGKSSSK RRPIRPSFDA AADNEFITLL HGSDPVKVEL NRLENEVRDK DRELGEANAE
101: IKALRLSERQ REKAVEELTE ELTKLDEKLK LTESILESKN LEIKKINEEK KASMAAQFAA EATLRRVHAA QKDDDMPPIE AILAPLEAEL KLARSEIGKL
201: QEDNRALDRL TKSKEAALLE AERTVEAAMA KAAMVDDLQN KNQELMKQIE ICQEENKILD RMHRQKVAEV EKLTQTVREL EEAVLAGGAA ANAVRDYQRK
301: FQEMNEERKT LDRELARAKV TANRVATVVA NEWKDGNDKV MPVKQWLEER RFLQGEMQQL RDKLAITDRA AKSEAQLKEK FQLRLKVLEE TLRGTSSSAT
401: RNTPEARSMS NGPSRRQSLG GAENLQKFTS NGALSKKAPA SQMRHSLSIN STSVLKNAKG TSKSFDGGTR SVDRGKALLN GPGNYSFNKA TDDSKEAESG
501: NGWKENSEEK PQSEDPEAAT EDSVPGVLYD LLQKEVVSLR KASNEKDQSL KDKDDAIEML AKKVETLTKA MEVEAKKMRR EVAAMEKEVA AMRVEKDQDA
601: RAKRFSNSKS PSNTAQILAG RAAGRSGGLT KSTQ
101: IKALRLSERQ REKAVEELTE ELTKLDEKLK LTESILESKN LEIKKINEEK KASMAAQFAA EATLRRVHAA QKDDDMPPIE AILAPLEAEL KLARSEIGKL
201: QEDNRALDRL TKSKEAALLE AERTVEAAMA KAAMVDDLQN KNQELMKQIE ICQEENKILD RMHRQKVAEV EKLTQTVREL EEAVLAGGAA ANAVRDYQRK
301: FQEMNEERKT LDRELARAKV TANRVATVVA NEWKDGNDKV MPVKQWLEER RFLQGEMQQL RDKLAITDRA AKSEAQLKEK FQLRLKVLEE TLRGTSSSAT
401: RNTPEARSMS NGPSRRQSLG GAENLQKFTS NGALSKKAPA SQMRHSLSIN STSVLKNAKG TSKSFDGGTR SVDRGKALLN GPGNYSFNKA TDDSKEAESG
501: NGWKENSEEK PQSEDPEAAT EDSVPGVLYD LLQKEVVSLR KASNEKDQSL KDKDDAIEML AKKVETLTKA MEVEAKKMRR EVAAMEKEVA AMRVEKDQDA
601: RAKRFSNSKS PSNTAQILAG RAAGRSGGLT KSTQ
Arabidopsis Description
ATMAP70-2microtubule-associated proteins 70-2 [Source:TAIR;Acc:AT1G24764]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.