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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g115070.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G68060.1 Solyc03g115070.1.1 AT5G61010.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400051425 Potato cytosol, nucleus, plasma membrane 99.04 98.72
Solyc05g017980.2.1 Tomato cytosol 86.01 86.01
Solyc04g008040.2.1 Tomato nucleus 82.64 83.31
KRH60419 Soybean cytosol, plastid 80.23 81.01
KRH49658 Soybean cytosol 79.42 80.85
KRH70354 Soybean endoplasmic reticulum 79.42 80.72
KRH41720 Soybean cytosol 79.9 80.68
VIT_01s0011g05790.t01 Wine grape cytosol 81.83 79.91
AT1G68060.1 Thale cress nucleus, plastid 74.92 74.92
CDX84971 Canola cytosol 73.79 74.63
Bra004053.1-P Field mustard nucleus, plastid 73.95 74.43
Os02t0736100-01 Rice cytosol 71.54 74.29
CDY07403 Canola nucleus, plastid 73.79 74.27
CDY04200 Canola plastid 73.31 73.91
CDY40783 Canola plastid 72.83 73.9
CDX96050 Canola nucleus, plastid 73.79 73.44
Bra004279.1-P Field mustard nucleus, plastid 73.79 73.44
CDY27573 Canola nucleus, plastid 73.79 73.32
Bra012493.1-P Field mustard nucleus 71.86 72.92
AT1G14840.1 Thale cress plastid 70.74 72.85
CDY03865 Canola nucleus 72.03 72.73
TraesCS6A01G298800.1 Wheat cytosol 69.94 72.62
CDY01879 Canola nucleus 72.83 72.6
TraesCS6B01G328200.1 Wheat cytosol 67.04 72.52
TraesCS6D01G278500.1 Wheat cytosol 69.77 72.45
TraesCS7A01G200700.1 Wheat nucleus 70.58 72.32
Bra010978.1-P Field mustard nucleus 70.9 72.18
TraesCS7B01G107500.1 Wheat nucleus 70.42 72.16
TraesCS7D01G204000.1 Wheat nucleus 70.42 72.16
EER89530 Sorghum nucleus 70.1 71.95
Bra032784.1-P Field mustard nucleus 68.81 71.81
CDY36126 Canola nucleus 70.74 71.31
Bra026184.1-P Field mustard nucleus 68.33 71.31
CDX81676 Canola plastid 67.85 71.28
Bra026800.1-P Field mustard nucleus 68.81 71.21
CDY45293 Canola nucleus 68.81 71.21
Zm00001d044724_P001 Maize cytosol 69.29 71.12
CDY33736 Canola nucleus 68.97 70.91
EES07297 Sorghum cytosol 67.2 70.85
CDY51769 Canola nucleus 68.49 70.76
Bra025859.1-P Field mustard nucleus 51.45 70.64
Zm00001d037291_P001 Maize nucleus 68.81 70.63
AT2G01750.2 Thale cress nucleus 71.22 70.32
Os06t0251700-01 Rice nucleus 68.65 70.23
Zm00001d017961_P003 Maize cytosol 66.56 70.17
HORVU7Hr1G041170.1 Barley nucleus 69.94 70.16
CDY17639 Canola nucleus, plastid 69.77 69.66
Solyc12g021250.1.1 Tomato cytosol 15.11 69.63
Bra024854.1-P Field mustard nucleus, plastid 70.26 69.37
CDY36256 Canola nucleus, plastid 69.13 69.13
AT1G24764.3 Thale cress endoplasmic reticulum, extracellular 74.76 67.1
HORVU0Hr1G017080.1 Barley nucleus, plastid 70.1 64.69
CDY24415 Canola nucleus 23.79 58.04
Solyc04g015010.2.1 Tomato cytosol 41.48 52.98
Solyc11g012660.1.1 Tomato nucleus 41.64 46.25
Protein Annotations
EnsemblPlants:Solyc01g005330.2.1EnsemblPlantsGene:Solyc01g005330.2GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0007010
GO:GO:0008017GO:GO:0008150GO:GO:0009987GO:GO:0016043InterPro:MAP70ncoils:Coil
PANTHER:PTHR31246PANTHER:PTHR31246:SF2PFAM:PF07058SEG:segUniParc:UPI0002761AC3UniProt:K4ASA0
MapMan:35.1:::::
Description
No Description!
Coordinates
chr1:-:232356..237013
Molecular Weight (calculated)
69412.1 Da
IEP (calculated)
9.116
GRAVY (calculated)
-0.826
Length
622 amino acids
Sequence
(BLAST)
001: MSEFSGELSE FSSGENGVGG GGNVRETTPL TVSASFKEGK SSRRKTAVMR PSLDADEFFN LLHGSDPVKL ELNRLENEVR DKDRELTEAQ AEIKALKLSE
101: RLREKAVEEL TDELSRVDEK LKLTESLLES KNLEIKKIND EKKASMAAQF AAEATLRRVH AAQKDDDMPP IEAILAPLEA ELKLARQEIA KLQDDNKALD
201: RLTKSKEAAL LEAERTVQSA LAKASMVDDL QNKNQELMKQ IEICQEENKI LDRMHRQKVA EVEKLTQTVR ELEEAVLAGG AAANAVRDYQ RKVQEMNEER
301: KTLDRELARA KVTANRVATV VANEWKDAND KVMPVKQWLE ERRFLQGEMQ TLRDKLTVTE RAAKSEAMLK ERYQLRLKVL EETLRSSSSA TRSTPDGRSS
401: SNGPSRRQSL GGAENISKLT YNGFLPKRSP SFQLRSSGSS TVLKNAKGTS KSFDGGSRSL DRGKNLLNGT GPNFNSSKSC DGTKDNETEN SSWKASQVEK
501: SNDTQVTETE DTIPGILYDL LQKEVVALRK AGHEKDQSLK DKDDAIEMLA KKVETLTKAM EVEAKKMRRE VAAMEKEVSA MRVEKDQENR AKRFANSKGP
601: VSSSQLPPGR NVARSGLTRN IQ
Best Arabidopsis Sequence Match ( AT1G24764.1 )
(BLAST)
001: MSDVSGDGDL SATVTEHEVT PQPPVSSATY PSLTVSASYK ESSGGKSSSK RRPIRPSFDA AADNEFITLL HGSDPVKVEL NRLENEVRDK DRELGEANAE
101: IKALRLSERQ REKAVEELTE ELTKLDEKLK LTESILESKN LEIKKINEEK KASMAAQFAA EATLRRVHAA QKDDDMPPIE AILAPLEAEL KLARSEIGKL
201: QEDNRALDRL TKSKEAALLE AERTVEAAMA KAAMVDDLQN KNQELMKQIE ICQEENKILD RMHRQKVAEV EKLTQTVREL EEAVLAGGAA ANAVRDYQRK
301: FQEMNEERKT LDRELARAKV TANRVATVVA NEWKDGNDKV MPVKQWLEER RFLQGEMQQL RDKLAITDRA AKSEAQLKEK FQLRLKVLEE TLRGTSSSAT
401: RNTPEARSMS NGPSRRQSLG GAENLQKFTS NGALSKKAPA SQMRHSLSIN STSVLKNAKG TSKSFDGGTR SVDRGKALLN GPGNYSFNKA TDDSKEAESG
501: NGWKENSEEK PQSEDPEAAT EDSVPGVLYD LLQKEVVSLR KASNEKDQSL KDKDDAIEML AKKVETLTKA MEVEAKKMRR EVAAMEKEVA AMRVEKDQDA
601: RAKRFSNSKS PSNTAQILAG RAAGRSGGLT KSTQ
Arabidopsis Description
ATMAP70-2microtubule-associated proteins 70-2 [Source:TAIR;Acc:AT1G24764]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.