CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02176
CDY23090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68060.1	CDY02176	AT5G61010.1	21798944
AT1G68060.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004279.1-P	Field mustard	nucleus, plastid	100.0	100.0
CDY01879	Canola	nucleus	97.6	97.76
CDX84402	Canola	cytosol	9.12	93.44
CDY07403	Canola	nucleus, plastid	92.32	93.37
CDY04200	Canola	plastid	89.28	90.44
AT1G68060.1	Thale cress	nucleus, plastid	88.96	89.39
CDX84971	Canola	cytosol	83.52	84.88
CDY27573	Canola	nucleus, plastid	84.48	84.34
CDY40783	Canola	plastid	81.92	83.52
CDY36126	Canola	nucleus	82.08	83.14
CDY03865	Canola	nucleus	81.44	82.63
CDX95377	Canola	cytosol	8.0	79.37
KRH49658	Soybean	cytosol	75.84	77.58
KRH70354	Soybean	endoplasmic reticulum	75.36	76.96
KRH41720	Soybean	cytosol	74.72	75.81
KRH60419	Soybean	cytosol, plastid	74.4	75.49
PGSC0003DMT400075913	Potato	cytosol	74.08	75.04
Solyc04g008040.2.1	Tomato	nucleus	74.08	75.04
VIT_01s0011g05790.t01	Wine grape	cytosol	76.16	74.73
Solyc01g005330.2.1	Tomato	cytosol	73.44	73.79
CDY51769	Canola	nucleus	70.88	73.59
PGSC0003DMT400051425	Potato	cytosol, nucleus, plasma membrane	73.44	73.56
CDY45293	Canola	nucleus	70.72	73.54
PGSC0003DMT400056068	Potato	cytosol	73.12	73.47
CDY33736	Canola	nucleus	70.88	73.22
Solyc05g017980.2.1	Tomato	cytosol	72.64	72.99
CDX81676	Canola	plastid	69.12	72.97
CDX95376	Canola	cytosol	7.2	72.58
TraesCS6D01G278500.1	Wheat	cytosol	69.44	72.45
Os02t0736100-01	Rice	cytosol	69.28	72.29
TraesCS6B01G328200.1	Wheat	cytosol	65.76	71.48
TraesCS6A01G298800.1	Wheat	cytosol	68.32	71.29
CDY17639	Canola	nucleus, plastid	70.72	70.95
CDY36256	Canola	nucleus, plastid	70.4	70.74
TraesCS7D01G204000.1	Wheat	nucleus	67.84	69.85
TraesCS7B01G107500.1	Wheat	nucleus	67.68	69.69
TraesCS7A01G200700.1	Wheat	nucleus	67.68	69.69
EER89530	Sorghum	nucleus	67.2	69.31
EES07297	Sorghum	cytosol	65.12	68.98
Zm00001d037291_P001	Maize	nucleus	66.88	68.98
Zm00001d044724_P001	Maize	cytosol	66.4	68.48
Os06t0251700-01	Rice	nucleus	66.4	68.26
CDY24415	Canola	nucleus	27.84	68.24
Zm00001d017961_P003	Maize	cytosol	64.32	68.14
HORVU7Hr1G041170.1	Barley	nucleus	67.36	67.9
HORVU0Hr1G017080.1	Barley	nucleus, plastid	68.48	63.5
CDY35590	Canola	cytosol	38.72	47.08
CDY42967	Canola	cytosol, nucleus, plasma membrane	37.44	46.8
CDX90483	Canola	cytosol	37.28	46.32
CDY09638	Canola	cytosol	36.96	45.92

Protein Annotations

EnsemblPlants:CDX96050	EnsemblPlantsGene:GSBRNA2T00102087001	GO:A0A078E2H8	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007010	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:MAP70
ncoils:Coil	PANTHER:PTHR31246	PANTHER:PTHR31246:SF2	PFAM:PF07058	ProteinID:CDX96050	ProteinID:CDX96050.1
SEG:seg	UniParc:UPI00025416DA	MapMan:35.1	:	:	:

Description

BnaA07g26810D

Coordinates

chrLK031892:+:803162..806279

Molecular Weight (calculated)

69599.1 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.880

Length

625 amino acids

Sequence
(BLAST)

001: MTDVTTDGGF SAETPYPSLT VSASYKDTSS GNGGAKSSSR RRPIRPSFDA ATDNNEFITQ LHGSDPVKVE LNRLENEVRD KDRELGEAHA EIKALRLSER
101: QREKAVEELT DELTKLEEKL KLTESLLQGK NLEIKKINEE KKASMAAQFA AEATLRRVHA AQKDDDMPPI EAILAPLEAE LKLARSEIGK LQEDNRALDR
201: LTKSKEAALL DAERTVQTAM AKAALVDDLQ NKNQELMKQI EICQEENKIL DKMHRQKVAE VEKLTQTVRE LEEAVLAGGA AANAVRDYQR KFQEMNEERK
301: TLDRELARAK VTANRVATVV ANEWKDGNDK VMPVKQWLEE RRFLQGEMQQ LRDKLAISDR AAKSEAQLKE KFQLRLKVLE ETLRGTSSSS IRNTPEGRSM
401: SNGPSRRQSL GGADNLQKFG SNGFLPKKSP SSQMRNAFTS NSTSVLKNAK GTSRSFDGGT RSLDRGKALL NGPGKYSFNK ACEEAKESES SPNAWKEDSE
501: EKPPSELPAP TTEDNVPGVL YDLLQKEVVA LRKSSHEKDQ SLKDKDDAIE MLAKKVETLT KAMEVEAKKM RREVAAMEKE VAAMRVDKDQ DNRAKRSSNT
601: KNPSNTAQIL TGRAAGRSGL TRSTQ

Best Arabidopsis Sequence Match ( AT1G68060.1 )
(BLAST)

001: MSDVSADGGF LSAEQATTPV AIPTPYPSLT VSASYKEKSS GRRRPVRPSF DAAADNEFIT LLHGSDPVKV ELNRLENEVR DKDRELSEAN AEIKALRLSE
101: RQREKACEEL TDELAKLDGK LKLTESLLQS KNLEIKKINE EKKASMAAQF AAEATLRRVH AAQKDDDMPP IEAILAPLEA ELKLARSEIG KLQEDNRALD
201: RLTKSKEAAL LDAERTVETA LAKAALVDDL QNKNQELMKQ IEICQEENKI LDRMHRQKVA EVEKLTQTVR ELEEAVLAGG AAANAVRDYQ RKFQEMNEER
301: KTLDRELARA KVTANRVATV VANEWKDGND KVMPVKQWLE ERRFLQGEMQ QLRDKLAISD RAAKSEAQLK DKFQLRLRVL EETLRGTSSI SIRNTPEGRS
401: MSNGPSRRQS IGGSDNLQKF ASNGFLSKKT PMRNSFTSNS TSVLKNAKGT SKSFDGGTRS LDRGKALLKG PGNYSFNKAC DETKESESPN TWKEDSEEKP
501: PSELPAPATE DNVPGVLYDL LQKEVVALRK SSHEKDQSLK DKDDAIEMLA KKVETLTKAM EVEAKKMRRE VAAMEKEVAA MRVDKDQDNR AKRSSNTKPS
601: SNTAQILAAR AAGRSGLTRS TQ

Arabidopsis Description

MAP70.1Microtubule-associated protein 70-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9X0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.