Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026236.1-P | Field mustard | cytosol | 93.8 | 94.37 |
| CDY35590 | Canola | cytosol | 90.4 | 87.94 |
| CDX90483 | Canola | cytosol | 81.6 | 81.11 |
| CDY09638 | Canola | cytosol | 80.6 | 80.12 |
| AT4G17220.1 | Thale cress | cytosol | 78.0 | 76.02 |
| PGSC0003DMT400034592 | Potato | cytosol | 34.8 | 66.16 |
| Solyc04g015010.2.1 | Tomato | cytosol | 51.4 | 52.77 |
| PGSC0003DMT400038827 | Potato | cytosol | 51.6 | 51.09 |
| KRH11576 | Soybean | cytosol | 56.4 | 49.39 |
| KRH36588 | Soybean | cytosol | 56.0 | 49.04 |
| VIT_00s0194g00260.t01 | Wine grape | cytosol | 56.8 | 48.63 |
| Solyc11g012660.1.1 | Tomato | nucleus | 54.4 | 48.57 |
| KRH01966 | Soybean | mitochondrion | 53.4 | 47.34 |
| KRH51187 | Soybean | cytosol | 53.0 | 46.25 |
| GSMUA_Achr7P26720_001 | Banana | cytosol | 45.6 | 44.27 |
| CDX95376 | Canola | cytosol | 5.0 | 40.32 |
| CDX81676 | Canola | plastid | 45.2 | 38.18 |
| CDY45293 | Canola | nucleus | 45.8 | 38.1 |
| CDY51769 | Canola | nucleus | 45.8 | 38.04 |
| Os03t0215700-01 | Rice | cytosol | 39.0 | 37.86 |
| CDY36256 | Canola | nucleus, plastid | 47.0 | 37.78 |
| Zm00001d028219_P001 | Maize | cytosol | 38.6 | 37.77 |
| CDX84971 | Canola | cytosol | 46.4 | 37.72 |
| CDY17639 | Canola | nucleus, plastid | 47.0 | 37.72 |
| CDX84402 | Canola | cytosol | 4.6 | 37.7 |
| CDY36126 | Canola | nucleus | 46.4 | 37.6 |
| EER95273 | Sorghum | cytosol | 38.4 | 37.57 |
| CDY07403 | Canola | nucleus, plastid | 46.4 | 37.54 |
| CDY01879 | Canola | nucleus | 46.8 | 37.5 |
| CDX96050 | Canola | nucleus, plastid | 46.8 | 37.44 |
| CDY04200 | Canola | plastid | 46.0 | 37.28 |
| CDY27573 | Canola | nucleus, plastid | 46.6 | 37.22 |
| CDY33736 | Canola | nucleus | 44.8 | 37.02 |
| CDY40783 | Canola | plastid | 45.2 | 36.87 |
| HORVU4Hr1G067630.12 | Barley | nucleus | 38.2 | 36.38 |
| TraesCS4B01G245400.1 | Wheat | nucleus | 38.4 | 36.16 |
| TraesCS4A01G078900.2 | Wheat | nucleus | 38.2 | 35.97 |
| CDY03865 | Canola | nucleus | 44.2 | 35.88 |
| TraesCS4D01G244000.1 | Wheat | nucleus | 37.6 | 35.4 |
| CDX95377 | Canola | cytosol | 4.2 | 33.33 |
| CDY24415 | Canola | nucleus | 14.4 | 28.24 |
Protein Annotations
| MapMan:35.1 | GO:A0A078HYJ6 | UniProt:A0A078HYJ6 | EnsemblPlants:CDY42967 | ProteinID:CDY42967 | ProteinID:CDY42967.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007010 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00075746001 | InterPro:MAP70 | PFAM:PF07058 |
| PANTHER:PTHR31246 | PANTHER:PTHR31246:SF5 | UniParc:UPI0004EE1E81 | SEG:seg | : | : |
Description
BnaA01g17870DBnaA01g17870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYJ6]
Coordinates
chrLK032540:-:215585..217982
Molecular Weight (calculated)
56646.6 Da
IEP (calculated)
8.068
GRAVY (calculated)
-0.796
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAGENPFAS NTSSLQNQLR EKDKELLAAK AEIEALRTNE ELKKREFGEL RENVRKLEER LGISKNLVVQ KEVEMKKLEE EKEDALAAQD AAEEALRRVY
101: THQQEDDPLP LESVIAPLEA QIKFQKHQIS ALQEDKKALE RLTKSKESAL LEAERILKSA LERALIVEEV QNHNFELRRQ IEICQEEYKF LEKINRQKVL
201: EIEKLSQTIG ELEEAILAGG TAANAEEKRT LERELARVKV SASRVALAVA NEWKDENDRV MPVKQWLEER RLLHGEMQKL KDKLAVSERT AKAESQLNNL
301: IQERLKLRLK TVEDGLKSPN MFTVSPTTTK AEKSGKILGF LTSGGGGSKK RSTSQPRGSI TSRIHALNQP INRGEERDGK ENSKVTSNGS ADQHEGKAEE
401: DGNVDSEDMV SGFLYDRLQK EVISLRKICE SKEGTINAKN EEIKMLLKKV DALTKAIEVE TKKAKREAAA REKENALASL SEESKRCRKA NLPRRFVSFF
101: THQQEDDPLP LESVIAPLEA QIKFQKHQIS ALQEDKKALE RLTKSKESAL LEAERILKSA LERALIVEEV QNHNFELRRQ IEICQEEYKF LEKINRQKVL
201: EIEKLSQTIG ELEEAILAGG TAANAEEKRT LERELARVKV SASRVALAVA NEWKDENDRV MPVKQWLEER RLLHGEMQKL KDKLAVSERT AKAESQLNNL
301: IQERLKLRLK TVEDGLKSPN MFTVSPTTTK AEKSGKILGF LTSGGGGSKK RSTSQPRGSI TSRIHALNQP INRGEERDGK ENSKVTSNGS ADQHEGKAEE
401: DGNVDSEDMV SGFLYDRLQK EVISLRKICE SKEGTINAKN EEIKMLLKKV DALTKAIEVE TKKAKREAAA REKENALASL SEESKRCRKA NLPRRFVSFF
001: MTAAENPFVS DTSSLQSQLK EKEKELLAAK AEVEALRTNE ELKDRVFKEL RENVRKLEEK LGATENQVDQ KELERKKLEE EKEDALAAQD AAEEALRRVY
101: THQQDDDSLP LESIIAPLES QIKIHKHEIS ALQEDKKALE RLTKSKESAL LEAERILRSA LERALIVEEV QNHNFELRRQ IEICQDENKF LEKINRQKVL
201: EIEKLSQSIV ELEEAILAGG TAANAVRDYR RQISQLNDEK RTLERELARV KVSASRVALA VANEWKDEND RVMPVKQWLE ERRILHGEMQ KLKDKLAVSE
301: RTAKAESQLK ERLKLRLKTI EDGLKGPNTF FVSPTTKTEK SGKILGFLTS GGGSKKRSSS QLRGSVTGRI HAMNQPIDRV GESDEMENSK ITANGLTDQH
401: EEDSERKTEE DGNVYSEDMV SGFLYDRLQK EVIALRKLCE SKEGTINAKN EEIKMLLKKV DALTKAIEVE TKKAKREAAA REKENALAML NEESKLCRKA
501: KLPRSRIPNP RCQ
101: THQQDDDSLP LESIIAPLES QIKIHKHEIS ALQEDKKALE RLTKSKESAL LEAERILRSA LERALIVEEV QNHNFELRRQ IEICQDENKF LEKINRQKVL
201: EIEKLSQSIV ELEEAILAGG TAANAVRDYR RQISQLNDEK RTLERELARV KVSASRVALA VANEWKDEND RVMPVKQWLE ERRILHGEMQ KLKDKLAVSE
301: RTAKAESQLK ERLKLRLKTI EDGLKGPNTF FVSPTTKTEK SGKILGFLTS GGGSKKRSSS QLRGSVTGRI HAMNQPIDRV GESDEMENSK ITANGLTDQH
401: EEDSERKTEE DGNVYSEDMV SGFLYDRLQK EVIALRKLCE SKEGTINAKN EEIKMLLKKV DALTKAIEVE TKKAKREAAA REKENALAML NEESKLCRKA
501: KLPRSRIPNP RCQ
Arabidopsis Description
MAP70.5Microtubule-associated protein 70-5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.