Factsheet for HORVU4Hr1G067630.12

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G017080.1
HORVU2Hr1G038180.2
HORVU2Hr1G048520.1
HORVU2Hr1G069400.8
HORVU3Hr1G034750.5
HORVU4Hr1G006120.1
HORVU4Hr1G064990.1
HORVU6Hr1G001980.1
HORVU6Hr1G036020.1
HORVU6Hr1G036810.5
HORVU7Hr1G041170.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17220.1	HORVU2Hr1G038180.2	AT1G03140.1	21798944
AT4G17220.1	HORVU4Hr1G006120.1	AT1G03140.1	21798944
AT4G17220.1	HORVU2Hr1G048520.1	AT1G30860.1	21798944
AT4G17220.1	HORVU0Hr1G017080.1	AT1G68060.1	21798944
AT4G17220.1	HORVU7Hr1G041170.1	AT1G68060.1	21798944
AT4G17220.1	HORVU4Hr1G064990.1	AT2G32840.1	21798944
AT4G17220.1	HORVU2Hr1G069400.8	AT3G11590.1	21798944
AT4G17220.1	HORVU3Hr1G034750.5	AT4G02150.1	21798944
AT4G17220.1	HORVU6Hr1G036020.1	AT4G32190.1	21798944
AT4G17220.1	HORVU6Hr1G036810.5	AT5G19960.1	21798944
AT4G17220.1	HORVU6Hr1G001980.1	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G245400.1	Wheat	nucleus	74.48	73.63
TraesCS4A01G078900.2	Wheat	nucleus	69.52	68.74
TraesCS4D01G244000.1	Wheat	nucleus	67.05	66.29
EER95273	Sorghum	cytosol	59.81	61.45
Zm00001d028219_P001	Maize	cytosol	59.05	60.67
Os03t0215700-01	Rice	cytosol	58.86	60.0
PGSC0003DMT400034592	Potato	cytosol	28.0	55.89
GSMUA_Achr7P26720_001	Banana	cytosol	41.33	42.14
Solyc04g015010.2.1	Tomato	cytosol	39.05	42.09
PGSC0003DMT400038827	Potato	cytosol	39.43	40.99
KRH11576	Soybean	cytosol	41.9	38.53
CDY42967	Canola	cytosol, nucleus, plasma membrane	36.38	38.2
KRH36588	Soybean	cytosol	40.95	37.65
AT4G17220.1	Thale cress	cytosol	36.57	37.43
Bra026236.1-P	Field mustard	cytosol	35.43	37.42
KRH51187	Soybean	cytosol	40.38	37.0
CDY35590	Canola	cytosol	36.19	36.97
Solyc11g012660.1.1	Tomato	nucleus	39.24	36.79
CDY09638	Canola	cytosol	35.24	36.78
CDX90483	Canola	cytosol	35.05	36.58
VIT_00s0194g00260.t01	Wine grape	cytosol	40.0	35.96
KRH01966	Soybean	mitochondrion	36.95	34.4
HORVU5Hr1G000150.1	Barley	cytosol, mitochondrion	39.05	34.34
HORVU7Hr1G041170.1	Barley	nucleus	38.86	32.9
HORVU0Hr1G017080.1	Barley	nucleus, plastid	39.05	30.42

Protein Annotations

EMBL:AK373639	EnsemblPlants:HORVU4Hr1G067630.12	EnsemblPlantsGene:HORVU4Hr1G067630	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007010	GO:GO:0007275	GO:GO:0008017	GO:GO:0008150	GO:GO:0009832	GO:GO:0009987
GO:GO:0010051	GO:GO:0016043	InterPro:MAP70	ncoils:Coil	PANTHER:PTHR31246	PANTHER:PTHR31246:SF5
PFAM:PF07058	SEG:seg	UniParc:UPI00020086C9	UniProt:F2EBW4	MapMan:35.1	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EBW4]

Coordinates

chrchr4H:-:560695435..560701897

Molecular Weight (calculated)

59541.5 Da

IEP (calculated)

8.444

GRAVY (calculated)

-0.936

Length

525 amino acids

Sequence
(BLAST)

001: MGSLGSEVGH GGREMFHGHP DPVVDELNRL ENLLREKERE LGLAYSEIKG MKVTEALKDK AIAELSKELK KQDEKLSILE KQLEQKNLDV KRLCNERKEA
101: LSAQFAAEAS LRRIHSAQRE EEVVPFDAII GPLESDIKKY KHEIAVLQDD KKALERHLKL NEAAFAEAGD ILRSALERAL IVEDVQNQNI ELKKQMEIYH
201: EENMLLEKSN RQKVLEIEKL THTVGELEES ILTTRDVANA VHFYQNQATR LNEEKKTLER ELARAKVYVN RVATTTANEW KDDADKLMPV KRWLEERRLL
301: QGEIQRLRDK IAIAERSAKV EAQLNDKLKR RLKSLEEDMR NGKPNAPSIE TNRKSTLKRS TSQPRQPSTP RMSQQLASFE GIVDKRRPIS QPRVATAGKV
401: LRQPNSDTEP AEKARNVKQP GSPRARTAAA RKDRPVKNHL WATSKVTSDA GKENKEQNPN YKPHSSAPHV EEHDSTKPQA VVFDVNGDCG VQCSEHHKAM
501: DLENLDDEKV DASNAESTQG GNRGN

Best Arabidopsis Sequence Match ( AT1G14840.1 )
(BLAST)

001: MEERGFMSPS LAISASYREG GSKGMSRRRS MRPSFDADNE FMNLLHGSDP VRIELNRLEN EVRDKDRELS EGQAEIKALR LSERQREKAV EELTEELGKM
101: AEKLKLIENL LESKNLEIKK INEEKKASMA AQFAAEASLR RVHAAQKDDD MPPIEAILAP LEAELKLSRQ EIAKLQDDNK SLDRLTKSKE AALLDAERTV
201: QSALAKASMV DDLQNKNQEL MKQIEICQEE NRIIDKMHRQ KVAEVEKLMQ SVRELEEAVL AGGAAANAVR DYQRKFQEMN EERKILEREL ARAKVNANRV
301: ATVVANEWKD SNDKVMPVRQ WLEERRFLQG EMQQLRDKLA IADRAAKSEA QLKEKFLLRL RVLEESLKGP TSSSSRGTSV GRSSSNGPTR RQSLGGAETS
401: PKITSNGSLI KRTPSSQLRS LTASASTVLK HAKGTSRSFD GGTRSLDRSK VLINGPRSNF PLNHKSSEGT SRGESPSSIK GEEESADKAT NNDSVPGVLY
501: DLLQKEVITL RKAAHEKDQS LRDKDEAIEM LAKKVETLTK AMDVEAKKMR REVAVMGKEV AAMRVVDKGQ QDSKTRRLSV SKGNTAQLLS GRVSGRIGMT
601: RSTQ

Arabidopsis Description

MAP70.4Microtubule-associated protein 70-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQU7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.