CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87918
EER89530
EER92590
EER99396
EER99582
EES06098
EES06399
EES07297
EES11990
KXG29764
KXG30263
KXG32187
KXG37778
OQU81040

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17220.1	EER99582	AT1G03140.1	21798944
AT4G17220.1	KXG37778	AT1G03140.1	21798944
AT4G17220.1	EER99396	AT1G30860.1	21798944
AT4G17220.1	EER89530	AT1G68060.1	21798944
AT4G17220.1	EES07297	AT1G68060.1	21798944
AT4G17220.1	OQU81040	AT2G22680.1	21798944
AT4G17220.1	EER92590	AT2G32840.1	21798944
AT4G17220.1	EES11990	AT3G11590.1	21798944
AT4G17220.1	KXG30263	AT3G11590.1	21798944
AT4G17220.1	KXG32187	AT4G02150.1	21798944
AT4G17220.1	EES06399	AT4G32190.1	21798944
AT4G17220.1	KXG29764	AT5G19960.1	21798944
AT4G17220.1	EER87918	AT5G52010.1	21798944
AT4G17220.1	EES06098	AT5G61230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028219_P001	Maize	cytosol	85.71	85.71
Os03t0215700-01	Rice	cytosol	64.38	63.88
TraesCS4A01G078900.2	Wheat	nucleus	64.97	62.52
TraesCS4D01G244000.1	Wheat	nucleus	63.41	61.02
HORVU4Hr1G067630.12	Barley	nucleus	61.45	59.81
TraesCS4B01G245400.1	Wheat	nucleus	60.86	58.57
PGSC0003DMT400034592	Potato	cytosol	29.35	57.03
GSMUA_Achr7P26720_001	Banana	cytosol	43.25	42.91
Solyc04g015010.2.1	Tomato	cytosol	40.51	42.51
PGSC0003DMT400038827	Potato	cytosol	40.31	40.79
KRH51187	Soybean	cytosol	43.64	38.92
Solyc11g012660.1.1	Tomato	nucleus	42.47	38.75
KRH11576	Soybean	cytosol	43.25	38.7
VIT_00s0194g00260.t01	Wine grape	cytosol	44.03	38.53
CDY42967	Canola	cytosol, nucleus, plasma membrane	37.57	38.4
AT4G17220.1	Thale cress	cytosol	38.16	38.01
Bra026236.1-P	Field mustard	cytosol	36.79	37.83
KRH36588	Soybean	cytosol	42.07	37.65
CDY09638	Canola	cytosol	36.99	37.57
CDY35590	Canola	cytosol	37.77	37.55
CDX90483	Canola	cytosol	36.59	37.18
KRH01966	Soybean	mitochondrion	40.9	37.06
KXG24157	Sorghum	nucleus	40.9	36.28
EES07297	Sorghum	cytosol	40.31	34.92
EER89530	Sorghum	nucleus	40.7	34.32

Protein Annotations

MapMan:35.1	EntrezGene:8085303	UniProt:C5WSS4	ncoils:Coil	EnsemblPlants:EER95273	ProteinID:EER95273
ProteinID:EER95273.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007010	GO:GO:0007275
GO:GO:0008017	GO:GO:0008150	GO:GO:0009832	GO:GO:0009987	GO:GO:0010051	GO:GO:0016043
InterPro:MAP70	PFAM:PF07058	PANTHER:PTHR31246	PANTHER:PTHR31246:SF5	EnsemblPlantsGene:SORBI_3001G455700	unigene:Sbi.8353
UniParc:UPI0001A833F2	RefSeq:XP_002468275.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:73165044..73170309

Molecular Weight (calculated)

58672.6 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.967

Length

511 amino acids

Sequence
(BLAST)

001: MGSLGEVDHG KEMFHGHGHS DPVVDELNRL QNLLREKERE LGHAYSEIKG LKVTEALKDK AIAELSKELK KQDEKMRSLE KQLEQKNLEV KRLNNERKEA
101: LSAQFAAEAT LRRIHSSQKD EESVPFDAII APLESDIRKY RHEIAVLQDD KKALERHLKL KEVALVEAGN ILRSALERAL IVEDVQNQNI ELKKQMEIYH
201: EENKLLEKAN RQKVLEVEKL THTINELEES ILATGEVANA VHFYQNQATM LNEEKRTLER ELARAKVYVN RVASTTANEW KNDSEKLMPV KRWLEERRHL
301: QGEIQRLRDK ITIAEKSSKI EAQLNDKLKR RLKSLEDDMR NETSNSSTKE INKQATPRRS TSQPKQHKTM RVLPQPYSHE AIDRRRPISQ PRASVAGKVL
401: KQPNSETKPI EKIRVVKRFD SPRARTVSSK GECLVKNQLW ASKGKMDVVA GKENKVQNPN SKTCLIVSHP QGHIETKVFD GNDEYGIQSS EHHEDVENER
501: NGDSSSDESS P

Best Arabidopsis Sequence Match ( AT1G14840.1 )
(BLAST)

001: MEERGFMSPS LAISASYREG GSKGMSRRRS MRPSFDADNE FMNLLHGSDP VRIELNRLEN EVRDKDRELS EGQAEIKALR LSERQREKAV EELTEELGKM
101: AEKLKLIENL LESKNLEIKK INEEKKASMA AQFAAEASLR RVHAAQKDDD MPPIEAILAP LEAELKLSRQ EIAKLQDDNK SLDRLTKSKE AALLDAERTV
201: QSALAKASMV DDLQNKNQEL MKQIEICQEE NRIIDKMHRQ KVAEVEKLMQ SVRELEEAVL AGGAAANAVR DYQRKFQEMN EERKILEREL ARAKVNANRV
301: ATVVANEWKD SNDKVMPVRQ WLEERRFLQG EMQQLRDKLA IADRAAKSEA QLKEKFLLRL RVLEESLKGP TSSSSRGTSV GRSSSNGPTR RQSLGGAETS
401: PKITSNGSLI KRTPSSQLRS LTASASTVLK HAKGTSRSFD GGTRSLDRSK VLINGPRSNF PLNHKSSEGT SRGESPSSIK GEEESADKAT NNDSVPGVLY
501: DLLQKEVITL RKAAHEKDQS LRDKDEAIEM LAKKVETLTK AMDVEAKKMR REVAVMGKEV AAMRVVDKGQ QDSKTRRLSV SKGNTAQLLS GRVSGRIGMT
601: RSTQ

Arabidopsis Description

MAP70.4Microtubule-associated protein 70-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQU7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.