CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88892
EER92305
EER94266
EER95273
EER95951
EER97734
EES04471
EES05120
EES05709
EES07849
EES12026
EES18298
KXG22636
KXG22761
KXG27493
KXG34022
KXG37365
KXG38894
OQU78181
OQU87920
OQU92250

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	EER94266	AT1G01050.1	21798944
AT5G65683.1	EES18298	AT1G01050.1	21798944
AT5G65683.1	KXG27493	AT1G01050.1	21798944
AT5G65683.1	OQU87920	AT1G01050.1	21798944
AT5G65683.1	OQU92250	AT1G01510.1	21798944
AT5G65683.1	EER88892	AT2G44950.1	21798944
AT5G65683.1	EES07849	AT3G08530.1	21798944
AT5G65683.1	KXG22761	AT3G08530.1	21798944
AT5G65683.1	EER95951	AT3G22960.1	21798944
AT5G65683.1	KXG37365	AT3G22960.1	21798944
AT5G65683.1	KXG22636	AT3G24140.1	21798944
AT5G65683.1	EES05120	AT3G48550.1	21798944
AT5G65683.1	EES12026	AT3G48550.1	21798944
AT5G65683.1	EES04471	AT3G54170.1	21798944
AT5G65683.1	EER92305	AT3G56270.1	21798944
AT5G65683.1	EER97734	AT3G56270.1	21798944
AT5G65683.1	OQU78181	AT3G56270.1	21798944
AT5G65683.1	EER95273	AT4G17220.1	21798944
AT5G65683.1	EES05709	AT4G17680.1	21798944
AT5G65683.1	KXG38894	AT4G17680.1	21798944
AT5G65683.1	KXG34022	AT5G43280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024940_P001	Maize	peroxisome	86.57	83.99
Zm00001d004553_P001	Maize	peroxisome	87.13	83.07
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	67.27	69.81
TraesCS2A01G045100.1	Wheat	peroxisome	71.33	67.11
TraesCS2D01G043700.1	Wheat	peroxisome	70.49	66.06
TraesCS2B01G057300.1	Wheat	peroxisome	70.49	65.45
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	47.97	46.86
GSMUA_Achr4P22090_001	Banana	nucleus	46.71	46.71
GSMUA_Achr7P01890_001	Banana	mitochondrion	46.01	46.08
GSMUA_Achr5P14740_001	Banana	mitochondrion	43.5	44.94
VIT_07s0205g00030.t01	Wine grape	nucleus	40.98	44.66
Solyc04g076860.2.1	Tomato	nucleus	43.08	41.07
PGSC0003DMT400016355	Potato	nucleus	42.66	40.45
VIT_18s0001g08100.t01	Wine grape	plastid	42.8	40.42
PGSC0003DMT400078676	Potato	plastid	40.14	40.37
Solyc02g091710.2.1	Tomato	plastid	40.14	39.97
CDY28148	Canola	plastid	36.36	38.29
KRH74431	Soybean	mitochondrion	35.66	37.5
AT5G49665.1	Thale cress	plastid	38.74	37.43
Bra040498.1-P	Field mustard	plastid	36.92	36.26
KRH39527	Soybean	extracellular, golgi	27.41	36.23
CDY25618	Canola	nucleus, peroxisome, plastid	33.15	35.8
Bra030218.1-P	Field mustard	nucleus	33.57	35.71
KRH72527	Soybean	nucleus	32.45	35.64
CDY31616	Canola	nucleus	34.13	35.52
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	33.99	35.47
CDY45010	Canola	mitochondrion, peroxisome	36.08	35.44
Bra017859.1-P	Field mustard	plastid	31.19	35.28
KRH75634	Soybean	nucleus	31.89	35.19
KRH45469	Soybean	nucleus	8.67	35.03
CDX89500	Canola	cytosol, peroxisome, plastid	32.87	34.92
KRH45468	Soybean	cytosol, peroxisome	19.58	34.74
KRH16916	Soybean	nucleus	32.59	34.57
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	32.73	34.26
Bra024408.1-P	Field mustard	plastid	32.59	32.91
CDY08765	Canola	plastid	32.59	32.91
Bra031849.1-P	Field mustard	plastid	32.17	32.49
CDY52535	Canola	plastid	31.89	32.11
AT4G37890.1	Thale cress	nucleus	33.15	32.07
CDY45614	Canola	plastid	31.75	31.88
AT5G65683.1	Thale cress	peroxisome, plastid	30.63	30.54
CDY37838	Canola	plastid	18.6	26.6
OQU85917	Sorghum	nucleus	21.96	21.3
EER91509	Sorghum	nucleus	16.92	20.72
OQU85324	Sorghum	mitochondrion	20.28	20.63
EER95529	Sorghum	nucleus	18.74	20.62
OQU91675	Sorghum	cytosol	17.9	20.58
OQU81931	Sorghum	mitochondrion	19.86	20.37
OQU93256	Sorghum	mitochondrion	18.6	19.05
EER91513	Sorghum	mitochondrion	18.74	19.03
EER91508	Sorghum	cytosol, plastid	17.2	19.01
OQU90497	Sorghum	cytosol	13.29	18.45
OQU93258	Sorghum	cytosol	17.9	18.23
OQU79988	Sorghum	cytosol	13.71	18.11
OQU89212	Sorghum	cytosol	13.01	16.64
EES05180	Sorghum	mitochondrion	8.39	16.26
KXG38506	Sorghum	cytosol	7.41	15.68
EES11757	Sorghum	cytosol	10.77	14.84
KXG20893	Sorghum	cytosol, plastid	11.75	13.75
EER87790	Sorghum	endoplasmic reticulum, extracellular	11.33	12.74
EES10354	Sorghum	plastid	8.25	12.39
KXG25767	Sorghum	mitochondrion	8.11	12.39
OQU75754	Sorghum	mitochondrion, plastid	10.49	12.12

Protein Annotations

EnsemblPlants:OQU81040	EnsemblPlantsGene:SORBI_3006G001200	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR10579	PANTHER:PTHR10579:SF55	PFAM:PF17123	PFscan:PS50089	ProteinID:OQU81040
ProteinID:OQU81040.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B8BA5A7	UniProt:A0A1Z5RBA3
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:176989..181543

Molecular Weight (calculated)

75901.6 Da

IEP (calculated)

10.181

GRAVY (calculated)

-0.492

Length

715 amino acids

Sequence
(BLAST)

001: MGTGWRRALC TSVQRDDDRD RDAKNKKRRP QPHDAPSPRA AGTGGFFSAV KTAATGGGIS SSSNPSTPTL RCRTRPLQQP ADPAPVTPPS APPPAARKHR
101: VPLFQALSAP ASPRSPSRFA LLKASLLPSK SRCGVCSRGV KSGGSSAVFT AECSHAFHFP CIAAHARTLL RSGVLSCPVC ASPWRQAPFL ASLRLHCSFH
201: DDAQSKHRGG GGDGRKTPPP ASAAGGPKLY DDDEPLLAPK AASNGGGFNP IPEADEDDDE EQGAAEFRGF FPRPRTTSGL AVTVAPEAAL VSSGRRHGKY
301: VVAVKVKAPG LRSSSAAPRR APITSRTGQR SARQIVDRLV VCAAAATQGQ GQGQEQAQQS ACVGDALRKA TKVLEDRRDR NPVATVMLLS DTQQQQQQQQ
401: PAVAVENSSR KQFGRPAVAP ATRFTHVEIP IGPGDAPPLV SSESEEKQSA EPPVEHAFAK CLGGLVSVVM QEVHLELAFP TGEITAVYSC GPGQQAVAVS
501: GGGAGVSVRL GEMYAEEERE LLVEVRAPLG SHPHSLSVRC SYRDPASQET VRGGEQPLLL PPLQGERASS RRLHDLFVAT RAVAESRRLA ELQDLATAIH
601: LLSSARALVL QSPPTQQQQE LVGSLDTELS DMRWRRANQH QEPLTPTSRS GRRRRDGDST TPVGTPRGSA GPAGAGEPLT PTSAWRAAEQ LAKVAIMRKS
701: MNRVSDLHGF ENARF

Best Arabidopsis Sequence Match ( AT4G37890.2 )
(BLAST)

001: MMNGLRRTFW SSIHKKKDNN RVDDSLDRQK PTTTSRFGFF SNPSTPRSET RPDSVTCSPT IPCQSWSATA ISTPSPSLPA SPKLQCDTSG DVTPTRNRSP
101: LSFLSVSSSS STPSSPKSPA SFSLLKSKLC FTKSSISSSK CGICLQSAKA GRGTAIFTAE CSHTFHFPCV ASRAGDRNLL SDCPVCGASW RETSLLPLSL
201: SSSLHESGSE SDSKIRESKN NNKSLRVYND DEPLISSPIS RTGFNTIPES NEDEEEEDND DGEFKGFYVN TPSPLTTKKM LTDSVTGHVD VKLSSEAAIV
301: AVGRGNETYS VLMKIKSPSL PTARRSPVDL VTVIDVSGGN IEMVKRAMRQ VISSLRETDR LSMVSFSSSS KRLTPLRRMT ANGRRLARRI VDDISGDGDG
401: MSVNDAVKKA AKVIEDRRQK NLFTTIFVLT DRNRNSAHQA QLAQPDFVTS TRFSHLEIPT HTIWLGACNH ALPEDVFAKR IKSLLSLSVQ DLTLNLGLVS
501: GSGQGKVTSV YSLSGRPVWL GSGLIRLGDM YGDEEREVLV ELKSPSSSRS QRIMTVRSRH VDPTTQEIKN YEDRALMIPR PTTVRSSDPS IARLRNLHVS
601: TRAVAESRRL VEVNDYSGAE RMLTSARALL VQYGLSSSDS CLRGLEAELA DLNRLRGRHV AVKSPEPVVQ KSEPLTPTSA WRAAERLAKV AIMRKHMNRV
701: SDLHGFENAR F

Arabidopsis Description

EDA40Probable E3 ubiquitin-protein ligase EDA40 [Source:UniProtKB/Swiss-Prot;Acc:F4JSV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.