CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	94.91	95.18
Bra017859.1-P	Field mustard	plastid	87.05	94.62
AT4G37890.1	Thale cress	nucleus	80.35	74.7
CDY25618	Canola	nucleus, peroxisome, plastid	60.99	63.29
CDX89500	Canola	cytosol, peroxisome, plastid	61.57	62.85
KRH74431	Soybean	mitochondrion	47.45	47.94
VIT_07s0205g00030.t01	Wine grape	nucleus	45.71	47.87
KRH45468	Soybean	cytosol, peroxisome	27.95	47.64
KRH39527	Soybean	extracellular, golgi	36.97	46.95
PGSC0003DMT400078676	Potato	plastid	48.03	46.41
Solyc02g091710.2.1	Tomato	plastid	48.18	46.1
CDY08765	Canola	plastid	45.41	44.07
CDY52535	Canola	plastid	45.27	43.8
CDY45614	Canola	plastid	44.69	43.12
KRH75634	Soybean	nucleus	40.32	42.75
CDY37838	Canola	plastid	29.4	40.4
CDY28148	Canola	plastid	39.74	40.21
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	38.28	38.17
CDY45010	Canola	mitochondrion, peroxisome	40.03	37.77
GSMUA_Achr7P01890_001	Banana	mitochondrion	37.99	36.55
TraesCS2A01G045100.1	Wheat	peroxisome	40.32	36.45
Zm00001d024940_P001	Maize	peroxisome	38.86	36.23
TraesCS2D01G043700.1	Wheat	peroxisome	40.17	36.17
GSMUA_Achr5P14740_001	Banana	mitochondrion	36.39	36.13
Zm00001d004553_P001	Maize	peroxisome	39.16	35.87
GSMUA_Achr4P22090_001	Banana	nucleus	37.26	35.8
TraesCS2B01G057300.1	Wheat	peroxisome	39.88	35.58
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	37.7	35.38
KRH45469	Soybean	nucleus	9.02	35.03
OQU81040	Sorghum	peroxisome	35.52	34.13
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	21.83	27.83
CDY67781	Canola	cytosol	21.11	27.41
CDY31517	Canola	extracellular, mitochondrion, plastid	22.85	26.25
CDY52708	Canola	extracellular, mitochondrion, plastid	22.56	25.75
CDY32819	Canola	cytosol	21.98	25.0
CDX93597	Canola	cytosol	22.71	24.26
CDX74871	Canola	mitochondrion	21.11	23.77
CDX91506	Canola	mitochondrion	20.96	23.68
CDX95099	Canola	cytosol	18.92	23.13
CDY17702	Canola	mitochondrion	12.08	21.56
CDX77800	Canola	nucleus	16.16	19.54
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	0.29	0.52

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	GO:A0A078H1G1	UniProt:A0A078H1G1	EnsemblPlants:CDY31616
ProteinID:CDY31616	ProteinID:CDY31616.1	EnsemblPlantsGene:GSBRNA2T00050153001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF13768	PFAM:PF17123	PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF59
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EE4382	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

BnaA03g54360DBnaA03g54360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1G1]

Coordinates

chrLK032275:+:409094..411425

Molecular Weight (calculated)

74918.1 Da

IEP (calculated)

10.155

GRAVY (calculated)

-0.386

Length

687 amino acids

Sequence
(BLAST)

001: MMNGLKRTFW ISKHRKTEDR VDDRAKPTSR FGFFSNPSTP KSETRPDSAS PTLRCQSWGA TAVATPSSPS LPASPNLQCM TSGDVTPTAT TPRRNRSPLS
101: LLSLSSPSSP ASFSLLKAKL CFTKSNGSRC GICLQSAKAG RGTAIFTAEC SHTFHFPCVA SRAGDLNLLA ACPVCGASWR DTSLLPLSPL LHDLKSPESE
201: SESRTRESSS NKSLRVYNDD EPLISSPISP AGFNTILESD ENEDDEEEDN GGFKGFFVNT PLTSNKRLTD SVDVKLSSEA AVVAVGRGSY ETYSVLMKIK
301: SPPLPASRRR PPVDLVTVLD VGGSRVETVR RAMRLVISSL RENDRLSMVS FSSSSKRLSP LRRMTANGRR VARRILDDIS GDGEGMSVKD AVKKAAKVIE
401: DRRQRNLFAT IFVLTDSAHQ AQSDFVSSTR VSLLEIPTHT LYLGACTKVI PEDVLAKRIK GLLSVSVQDL TLQLGSGQGE ITSVYSLSGR PIWLGSGLIR
501: LGDMYGEEER QVLVELKSPA SGKSHRIMTV RSRHVDPTTQ ETRDSDDRAL LIPRPTAVRS SSNTNIARLR NVHVSTRAVA ESRRLIEASD YSGAERMLTS
601: ARALLVQYGS SSGDACLRGL DTEIADLNRV RGSRHVAVKS PEPVAQKTEP LTPTSAWRAA ERLAKVAIMK KHMNRVSDLH GFENARF

Best Arabidopsis Sequence Match ( AT4G37890.2 )
(BLAST)

001: MMNGLRRTFW SSIHKKKDNN RVDDSLDRQK PTTTSRFGFF SNPSTPRSET RPDSVTCSPT IPCQSWSATA ISTPSPSLPA SPKLQCDTSG DVTPTRNRSP
101: LSFLSVSSSS STPSSPKSPA SFSLLKSKLC FTKSSISSSK CGICLQSAKA GRGTAIFTAE CSHTFHFPCV ASRAGDRNLL SDCPVCGASW RETSLLPLSL
201: SSSLHESGSE SDSKIRESKN NNKSLRVYND DEPLISSPIS RTGFNTIPES NEDEEEEDND DGEFKGFYVN TPSPLTTKKM LTDSVTGHVD VKLSSEAAIV
301: AVGRGNETYS VLMKIKSPSL PTARRSPVDL VTVIDVSGGN IEMVKRAMRQ VISSLRETDR LSMVSFSSSS KRLTPLRRMT ANGRRLARRI VDDISGDGDG
401: MSVNDAVKKA AKVIEDRRQK NLFTTIFVLT DRNRNSAHQA QLAQPDFVTS TRFSHLEIPT HTIWLGACNH ALPEDVFAKR IKSLLSLSVQ DLTLNLGLVS
501: GSGQGKVTSV YSLSGRPVWL GSGLIRLGDM YGDEEREVLV ELKSPSSSRS QRIMTVRSRH VDPTTQEIKN YEDRALMIPR PTTVRSSDPS IARLRNLHVS
601: TRAVAESRRL VEVNDYSGAE RMLTSARALL VQYGLSSSDS CLRGLEAELA DLNRLRGRHV AVKSPEPVVQ KSEPLTPTSA WRAAERLAKV AIMRKHMNRV
701: SDLHGFENAR F

Arabidopsis Description

EDA40Probable E3 ubiquitin-protein ligase EDA40 [Source:UniProtKB/Swiss-Prot;Acc:F4JSV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.