CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:

plastid 2
mitochondrion 4
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52708	Canola	extracellular, mitochondrion, plastid	95.65	95.02
Bra002456.1-P	Field mustard	mitochondrion, plastid	98.33	84.0
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	87.46	74.29
CDX74871	Canola	mitochondrion	58.36	57.21
CDX91506	Canola	mitochondrion	57.86	56.91
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	69.23	56.79
Solyc11g069600.1.1	Tomato	plastid	65.22	53.21
PGSC0003DMT400020896	Potato	mitochondrion, plastid	65.22	53.21
GSMUA_Achr5P20480_001	Banana	mitochondrion	53.85	50.79
GSMUA_Achr11P...	Banana	mitochondrion	45.32	50.37
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	45.15	50.09
GSMUA_Achr11P...	Banana	mitochondrion	52.01	49.76
CDY67781	Canola	cytosol	43.98	49.72
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	53.01	49.53
CDX95099	Canola	cytosol	45.82	48.75
CDY32819	Canola	cytosol	49.0	48.51
Os02t0619600-01	Rice	mitochondrion	54.35	45.84
Zm00001d017247_P002	Maize	mitochondrion	53.18	45.69
Zm00001d051119_P001	Maize	nucleus	52.17	45.35
OQU85324	Sorghum	mitochondrion	52.84	44.95
Os04t0508800-01	Rice	plasma membrane	53.18	44.92
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	53.34	44.8
TraesCS2D01G361900.1	Wheat	mitochondrion	51.84	44.8
CDX93597	Canola	cytosol	48.16	44.79
TraesCS2B01G382300.1	Wheat	mitochondrion	52.01	44.75
TraesCS6D01G207700.2	Wheat	mitochondrion	52.84	44.51
TraesCS6A01G227300.1	Wheat	mitochondrion	52.84	44.44
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	51.67	44.4
TraesCS6B01G254400.1	Wheat	mitochondrion	52.51	44.23
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	51.0	43.57
Zm00001d027622_P001	Maize	mitochondrion	49.16	42.49
OQU81931	Sorghum	mitochondrion	48.83	41.89
TraesCS4B01G344100.1	Wheat	mitochondrion	49.33	41.73
TraesCS5A01G512800.2	Wheat	mitochondrion	49.33	41.73
OQU93256	Sorghum	mitochondrion	48.33	41.4
TraesCS4D01G339200.1	Wheat	mitochondrion	48.83	41.3
HORVU4Hr1G084340.1	Barley	mitochondrion	48.66	41.16
Os03t0142500-01	Rice	plasma membrane	47.66	41.07
Zm00001d025825_P001	Maize	mitochondrion	48.16	40.91
GSMUA_Achr2P11780_001	Banana	golgi	32.11	40.68
CDY28148	Canola	plastid	29.43	25.92
CDY25618	Canola	nucleus, peroxisome, plastid	27.09	24.47
CDY45010	Canola	mitochondrion, peroxisome	29.43	24.18
CDX89500	Canola	cytosol, peroxisome, plastid	26.59	23.63
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	26.92	23.5
CDY08765	Canola	plastid	27.59	23.31
CDY45614	Canola	plastid	27.42	23.03
CDY31616	Canola	nucleus	26.25	22.85
CDY52535	Canola	plastid	26.42	22.25
CDY37838	Canola	plastid	17.06	20.4
CDY17702	Canola	mitochondrion	12.71	19.74
CDX77800	Canola	nucleus	17.56	18.49
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	1.0	1.55

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	GO:A0A078H232	UniProt:A0A078H232	EnsemblPlants:CDY31517
ProteinID:CDY31517	ProteinID:CDY31517.1	EnsemblPlantsGene:GSBRNA2T00047824001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PANTHER:PTHR10579
PANTHER:PTHR10579:SF97	SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	SignalP:SignalP-noTM	UniParc:UPI0004EEA7B3
InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

BnaA10g13540DBnaA10g13540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H232]

Coordinates

chrLK032274:+:8702..14171

Molecular Weight (calculated)

64492.3 Da

IEP (calculated)

8.690

GRAVY (calculated)

-0.150

Length

598 amino acids

Sequence
(BLAST)

001: MGSKWRKAKL ALGLNLCLYV PKTLEESSSL SRRSNDAVSL SPVTVPRPTT PTPSSSGLRL PRSISISSSK KTCAICLTTM KAGQGHAIFT AECSHSFHFH
101: CITTNVQHGN QICPVCRAKW NESKPIPAVF NDDEALEPQH HNPAESTKPG GVSGKLEVKT YPEISEVVRS VSFKDFSVLI NLKAPPVSSS SSSSRAPVDL
201: VTVLDVSGSM AGTKLALLKR AMGFALQAVN SLVSNGGTNI AEGLTKGAKV LIDRRFKNSV SSIVLLSDGQ DTYTMTSPTG SNTKGADYKT LLPKEVNRIP
301: VHAFGFGADH DASLMHSIAE NSGGTFSFIE SETVIQDAFA QCIGGLLSVM VQELRVKIEC VHPMLKIGSV KAGSYRFDSR TGSIEVGDLY AEEERNFLVN
401: LDVPVVDGVL DTMSLLKVGC VYRDPVTKET VDLSNSGEVK ILRPVLEQRP VVSVEVDRQK IRLRAAEAIS EARVLAERGD LTGAVSVLET CRGVLSETVS
501: GKAGDALCVS LCAELKETQE RMASRQVYES SGRAYVLAGL SSHSWQRATA RGDMSDTTTM SYQTQSMVDM VNLSQTMTPS ARRKLRQALT FPARPRAR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.