Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:
  • nucleus 1
  • plastid 2
  • mitochondrion 4
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, mitochondrion, plastid
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:extracellular
Predotar:secretory
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY31517 Canola extracellular, mitochondrion, plastid 74.29 87.46
CDY52708 Canola extracellular, mitochondrion, plastid 74.43 87.04
Bra020234.1-P Field mustard mitochondrion 84.09 85.18
Bra002456.1-P Field mustard mitochondrion, plastid 84.52 85.0
VIT_06s0004g02630.t01 Wine grape mitochondrion, nucleus 66.34 64.06
Solyc11g069600.1.1 Tomato plastid 63.78 61.26
PGSC0003DMT400020896 Potato mitochondrion, plastid 63.49 60.98
GSMUA_Achr5P20480_001 Banana mitochondrion 50.85 56.47
GSMUA_Achr1P03470_001 Banana mitochondrion, plastid 50.85 55.94
AT2G38970.1 Thale cress mitochondrion 54.83 55.78
GSMUA_Achr11P... Banana mitochondrion 49.29 55.52
AT1G08050.1 Thale cress plastid 48.86 53.67
GSMUA_Achr11P... Banana mitochondrion 39.77 52.04
Zm00001d017247_P002 Maize mitochondrion 50.57 51.15
Os02t0619600-01 Rice mitochondrion 51.42 51.06
AT3G54780.4 Thale cress endoplasmic reticulum, extracellular, plastid 49.29 50.88
Zm00001d051119_P001 Maize nucleus 49.72 50.87
OQU85324 Sorghum mitochondrion 50.71 50.78
TraesCS6D01G207700.2 Wheat mitochondrion 50.85 50.42
TraesCS6A01G227300.1 Wheat mitochondrion 50.85 50.35
HORVU6Hr1G057680.2 Barley cytosol, mitochondrion, nucleus 50.85 50.28
TraesCS6B01G254400.1 Wheat mitochondrion 50.57 50.14
TraesCS2D01G361900.1 Wheat mitochondrion 49.15 50.0
TraesCS2B01G382300.1 Wheat mitochondrion 49.29 49.93
TraesCS2A01G364100.2 Wheat cytosol, mitochondrion 48.72 49.28
Os04t0508800-01 Rice plasma membrane 49.29 49.01
HORVU2Hr1G088110.4 Barley cytosol, mitochondrion 48.3 48.57
Zm00001d027622_P001 Maize mitochondrion 47.3 48.12
OQU93256 Sorghum mitochondrion 47.59 47.99
OQU81931 Sorghum mitochondrion 47.44 47.92
Os03t0142500-01 Rice plasma membrane 46.73 47.41
TraesCS4B01G344100.1 Wheat mitochondrion 47.44 47.24
TraesCS5A01G512800.2 Wheat mitochondrion 47.3 47.1
TraesCS4D01G339200.1 Wheat mitochondrion 47.16 46.96
HORVU4Hr1G084340.1 Barley mitochondrion 47.02 46.82
Zm00001d025825_P001 Maize mitochondrion 46.45 46.45
GSMUA_Achr2P11780_001 Banana golgi 28.55 42.58
AT5G49665.1 Thale cress plastid 30.11 28.65
AT5G65683.1 Thale cress peroxisome, plastid 26.7 26.22
AT2G22680.1 Thale cress cytosol, peroxisome, plastid 25.28 26.06
AT4G37890.1 Thale cress nucleus 24.72 23.55
Protein Annotations
Gene3D:3.30.40.10Gene3D:3.40.50.410MapMan:35.1EntrezGene:836192ProteinID:AED97369.1ArrayExpress:AT5G60710
EnsemblPlantsGene:AT5G60710RefSeq:AT5G60710TAIR:AT5G60710RefSeq:AT5G60710-TAIR-GEnsemblPlants:AT5G60710.1TAIR:AT5G60710.1
Unigene:At.21965ProteinID:BAB09844.1GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0016020
InterPro:IPR001841InterPro:IPR002035InterPro:IPR013083InterPro:IPR036465RefSeq:NP_200879.1PFAM:PF00092
PFAM:PF14624PFAM:PF17123PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281
PFscan:PS50089PFscan:PS50234PANTHER:PTHR10579PANTHER:PTHR10579:SF97UniProt:Q9FF49SMART:SM00184
SMART:SM00327SUPFAM:SSF53300SUPFAM:SSF57850UniParc:UPI000009EE17InterPro:VWF_AInterPro:Vwaint_dom
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:segInterPro:vWFA_dom_sf::
Description
Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
Coordinates
chr5:-:24410581..24415145
Molecular Weight (calculated)
76426.5 Da
IEP (calculated)
9.162
GRAVY (calculated)
-0.244
Length
704 amino acids
Sequence
(BLAST)
001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.