Factsheet for GSMUA_Achr11P21360_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20480_001	Banana	mitochondrion	78.56	77.44
GSMUA_Achr11P...	Banana	mitochondrion	55.84	64.87
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	62.4	60.94
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	60.8	53.52
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	61.76	52.95
Zm00001d017247_P002	Maize	mitochondrion	58.88	52.87
OQU85324	Sorghum	mitochondrion	59.04	52.49
GSMUA_Achr6P36520_001	Banana	plastid	58.24	52.07
Zm00001d051119_P001	Maize	nucleus	57.28	52.03
CDY31517	Canola	extracellular, mitochondrion, plastid	49.76	52.01
TraesCS6B01G254400.1	Wheat	mitochondrion	58.72	51.69
CDY52708	Canola	extracellular, mitochondrion, plastid	49.6	51.49
Os02t0619600-01	Rice	mitochondrion	58.4	51.48
TraesCS6D01G207700.2	Wheat	mitochondrion	58.4	51.41
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	58.56	51.4
TraesCS6A01G227300.1	Wheat	mitochondrion	58.24	51.2
TraesCS2D01G361900.1	Wheat	mitochondrion	56.32	50.87
TraesCS2B01G382300.1	Wheat	mitochondrion	56.16	50.5
Bra005066.1-P	Field mustard	mitochondrion	52.8	50.3
PGSC0003DMT400059986	Potato	nucleus	58.4	50.21
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	55.84	50.14
PGSC0003DMT400020896	Potato	mitochondrion, plastid	58.72	50.07
Solyc11g069600.1.1	Tomato	plastid	58.56	49.93
Solyc05g056140.2.1	Tomato	nucleus	57.92	49.73
Os04t0508800-01	Rice	plasma membrane	56.32	49.72
CDX91506	Canola	mitochondrion	48.32	49.67
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	55.52	49.57
CDX74871	Canola	mitochondrion	48.16	49.34
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	55.52	49.29
Bra020234.1-P	Field mustard	mitochondrion	54.56	49.06
OQU93256	Sorghum	mitochondrion	54.72	49.0
Zm00001d027622_P001	Maize	mitochondrion	54.08	48.84
Os03t0142500-01	Rice	plasma membrane	53.6	48.27
Bra002456.1-P	Field mustard	mitochondrion, plastid	53.92	48.14
GSMUA_Achr2P11780_001	Banana	golgi	36.32	48.09
AT2G38970.1	Thale cress	mitochondrion	53.12	47.98
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	41.12	47.68
CDY67781	Canola	cytosol	40.0	47.26
TraesCS5A01G512800.2	Wheat	mitochondrion	53.44	47.24
OQU81931	Sorghum	mitochondrion	52.64	47.2
TraesCS4D01G339200.1	Wheat	mitochondrion	53.12	46.96
Zm00001d025825_P001	Maize	mitochondrion	52.8	46.88
HORVU4Hr1G084340.1	Barley	mitochondrion	52.96	46.82
TraesCS4B01G344100.1	Wheat	mitochondrion	52.64	46.53
CDY32819	Canola	cytosol	44.8	46.36
AT1G08050.1	Thale cress	plastid	47.52	46.33
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	44.96	45.99
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	49.28	45.16
CDX95099	Canola	cytosol	39.52	43.95
CDX93597	Canola	cytosol	44.96	43.7
GSMUA_Achr9P22360_001	Banana	plastid	14.72	22.72
GSMUA_Achr4P22090_001	Banana	nucleus	25.6	22.38
GSMUA_Achr5P14740_001	Banana	mitochondrion	23.84	21.53
GSMUA_Achr7P01890_001	Banana	mitochondrion	24.48	21.43
Bra018663.1-P	Field mustard	nucleus	44.32	21.0
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	23.68	20.22
GSMUA_Achr4P06340_001	Banana	mitochondrion	5.76	18.75

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EnsemblPlantsGene:GSMUA_Achr11G21360_001	EnsemblPlants:GSMUA_Achr11P21360_001	EnsemblPlants:GSMUA_Achr11T21360_001
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0RU66	PFAM:PF00092
PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI00029562F8	InterPro:VWF_A
InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	:	:

Description

zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G21360_001]

Coordinates

chr11:-:22014244..22018388

Molecular Weight (calculated)

68136.6 Da

IEP (calculated)

8.436

GRAVY (calculated)

-0.193

Length

625 amino acids

Sequence
(BLAST)

001: MGSMWRKAKR AMGFNLCVHV PRAMGEEEED DGCRLAGLAL MPSTPTPSSG GLRLPKSGIR SSKKTCAICL GSMKVGDGHA LFTAECSHKF HFHCITSNVK
101: HGNYVCPLCK ATWKEIPFQG SLSSEHPHGR ARVNPVNWPQ EEGPRSSQQN CPKIVEVNTH PEFSAIQQSA SLEDFAVLIH LKAPHVSMKP SPSRNLIASS
201: TVPQNSRAPI DLVTVLDVSG SMAGTKLALL KRAMSFVIQN LGPSDRLSVI AFSSTARRLF HLCRMSDSGR QQALQAVNSL VSSGGTNIAE GLRKGIKVIE
301: ERKEKNSVCS IILLSDGRDT YTFSSSASGA QHSELNYKSL VPSSILGGTA IPVHTFGFGV DHDSAAMHTI ATVSGGTFSF IESEVLIQNA FAQCIGGLLS
401: VVVQEMWLDV ECMHPGVRLA PIKSGSYRNQ LSSDARTGFI YVGDLYADEE RDFLVSVNVP PHMEEILLLK VASAYRDPIS NDIVHLEVKE VRIQRPEVVL
501: FQTPSIEVDR ERNRIQTAVA ISDARAAAER GALSDAVSIL EQRRKILSEY EASGRAYVLS GLSSHSSQRA TMRGDSTYSE TLIHAYQTPL MVDMLRRSQT
601: SCYSARSPAP PMHPTRSIPS QLQPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.