Factsheet for GSMUA_Achr6P36520_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	52.07	58.24
GSMUA_Achr5P20480_001	Banana	mitochondrion	52.65	58.04
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	49.07	53.59
Os02t0806700-01	Rice	nucleus	55.36	53.53
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	55.36	52.94
OQU85917	Sorghum	nucleus	55.51	52.65
GSMUA_Achr11P...	Banana	mitochondrion	40.2	52.23
Zm00001d018428_P001	Maize	mitochondrion	54.94	51.96
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	54.22	51.56
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	54.22	51.35
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	54.22	51.29
HORVU6Hr1G088580.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	54.22	51.08
GSMUA_Achr2P11780_001	Banana	golgi	29.9	44.28
GSMUA_Achr4P22090_001	Banana	nucleus	24.32	23.78
GSMUA_Achr9P22360_001	Banana	plastid	13.73	23.7
GSMUA_Achr7P01890_001	Banana	mitochondrion	23.89	23.39
GSMUA_Achr5P14740_001	Banana	mitochondrion	21.89	22.11
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	22.6	21.58
GSMUA_Achr4P06340_001	Banana	mitochondrion	5.44	19.79

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EnsemblPlantsGene:GSMUA_Achr6G36520_001	EnsemblPlants:GSMUA_Achr6P36520_001	EnsemblPlants:GSMUA_Achr6T36520_001
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0TD94	PFAM:PF00092
PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000295EA20	InterPro:VWF_A
InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G36520_001]

Coordinates

chr6:-:34454472..34457872

Molecular Weight (calculated)

75692.0 Da

IEP (calculated)

8.219

GRAVY (calculated)

-0.269

Length

699 amino acids

Sequence
(BLAST)

001: MNNRVAARNP RLRSPPIPEL DLSVDPLFPA SSLAGLEKNI EGKKNKKMVG SGWRKAKLAL GGLNLCLYSS EAVDGSGDAS PPDRRDDDAS LETEFSDLGA
101: PALNAPSLSS SSLWARASRS GSGSSKPLFF LPTFNIAFNI GDFAVVSLSH LLIQTCAICL ATMKPGQGHA LFTAECSHSF HFRCIASNVK FGNHVCPVCR
201: AKWKEVPFQG PSFAESSHVR SRINPRSVFD DDESLGSPSK SASTENFTVL IHLKAPLVPR TQNPGKDVHG DAQVPRSYRA PVDLVTVLDV SGSMSGTKLA
301: LLKQAMGFVI QNLGPSDRLS VITFSSTARR LFPLRRMSES GRQEALQAVN LLTTSGGTNI AEGLRKGAKV IEDRKEKNPV CSIILLSDGQ DTYIFTPTIR
401: NGQATEPDYR SLVPSSIRDG SAHHVPVHVF GFGSDHDSAS MHSISETSGG TFSFIEAEGA IQDAFAQCIG GLLSVVVQEM QVRLECLHPD VHLRCIKSGR
501: YPSRVADDGR SGTVAAGDMY ADEERDYLVS VNVPAADVDT PLLKVSCAYG DPVTKEVMRP EAVQVKIPRP VLVVSQTMSL EVDRQRNRLQ AAEAMVEARA
601: AAERGELSEA VSVLEDCRKR IVEYEATGRA YVLSGLSSHL CQRATTRGDM TESGSFVQSY QTPSMVDMLQ RSQTFSPATR RSNPKMRHTR SFPAGPKPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.