Factsheet for TraesCS6A01G375500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	99.32	98.78
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	99.18	98.78
HORVU6Hr1G088580.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	97.69	96.77
Os02t0806700-01	Rice	nucleus	85.58	87.0
OQU85917	Sorghum	nucleus	85.44	85.21
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	84.63	85.09
Zm00001d018428_P001	Maize	mitochondrion	82.99	82.54
GSMUA_Achr6P36520_001	Banana	plastid	51.56	54.22
TraesCS6A01G227300.1	Wheat	mitochondrion	50.75	52.46
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	49.25	52.01
TraesCS5A01G512800.2	Wheat	mitochondrion	46.26	48.09
TraesCS5A01G284900.1	Wheat	cytosol, mitochondrion, plastid	17.01	43.4
TraesCS2A01G358400.2	Wheat	cytosol, nucleus, peroxisome	36.33	40.89
TraesCS3A01G393700.1	Wheat	cytosol	28.84	40.23
TraesCS5A01G513100.1	Wheat	cytosol, plastid	26.94	40.08
TraesCS5A01G359200.1	Wheat	cytosol, peroxisome, plastid	28.57	40.08
TraesCS7A01G423300.1	Wheat	cytosol	31.84	39.53
TraesCS5A01G513000.1	Wheat	cytosol	37.82	37.57
TraesCS1A01G146700.1	Wheat	mitochondrion	32.93	37.29
TraesCS1A01G421500.1	Wheat	plastid	29.66	34.66
TraesCS5A01G011500.1	Wheat	cytosol	17.55	25.8
TraesCS7A01G010300.1	Wheat	nucleus, unclear	18.23	25.57
TraesCS5A01G011700.1	Wheat	cytosol	17.96	25.1
TraesCS4A01G484700.1	Wheat	cytosol, unclear	17.55	24.62
TraesCS2A01G045100.1	Wheat	peroxisome	24.76	23.95
TraesCS5A01G178300.1	Wheat	mitochondrion	16.6	23.15
TraesCS6A01G006500.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	16.73	17.4
TraesCS7A01G426800.1	Wheat	cytosol, peroxisome, plasma membrane	17.14	17.38
TraesCS5A01G011800.1	Wheat	plastid	15.51	13.43

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF97	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS6A01G375500	EnsemblPlants:TraesCS6A01G375500.1	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16448	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

No Description!

Coordinates

chr6A:-:597831294..597836820

Molecular Weight (calculated)

79099.9 Da

IEP (calculated)

8.226

GRAVY (calculated)

-0.310

Length

735 amino acids

Sequence
(BLAST)

001: MESRWRKAKM SLGLNLCVYV PRTLDDLDAG PPSTGSSTAA LVSPAASSYA TSANTTPTAD PGSAKGPGAL MPTTPTPTSA GLRLSKSGSK SFKKTCAICL
101: TIMKPGQGHA LFTAECSHTF HFHCISANVK HGSNNCPVCR TEWKELPFRG PLVAAIPQGS ARINPVNGQQ NGGHMTLLRP LPRARSSGRL HHVTCLLPDT
201: DRSVFNDDEP LDLCEATDDH QQGCSRTVEI TTHPEFTEIP ESTSERSFTV LIHLKAPLAQ NLHVPGDDSS PNTGRAPVDL ITVLDVSGSM AGTKLALLKR
301: AMGFVIQNLG SSDRLSVIAF SSSARRLFPL RRMTESGRKQ SLLAVNSLTS NGGTNIAEGL RKGSKVIEER QAKNPVCSII LLSDGQDTYT VSPSTGAHKP
401: FTVSPTASAQ KASAEYCALL PSTNGSQQVP VHVFGFGADH DAVSLHSISQ TSGGTFSFIE TEVTIQDAFA QCIGGLLSVV AQDLRVKVES VHPDVHFGSI
501: RSGSYSSRIA DDKRNGSIDV GDLYAEEERD FLMTLNVPQG CGEETALLKV GCVYKDPLMK ETINMAEVQV KISRPAFVSV QTVSIQVDRQ KNRLHAAEVM
601: AAARFSAERG ELAHAVSLLE DCRRMIMGSA SGQSGDRLCQ SLDAELKEMQ ERMASRQRYE ASGRAYVLSG LSSHSWQRAT SRGDSTDSES LIQAYQTTSM
701: VDMVLRSQTL TRSSTPKQTP QMRHAKSFPA RPQPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.