Factsheet for Zm00001d018428_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85917	Sorghum	nucleus	92.56	92.81
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	91.47	92.48
Os02t0806700-01	Rice	nucleus	85.93	87.83
TraesCS6B01G413100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	83.22	83.22
TraesCS6D01G360000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	82.95	83.06
HORVU6Hr1G088580.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	83.36	83.02
TraesCS6A01G375500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	82.54	82.99
Zm00001d051119_P001	Maize	nucleus	51.29	55.09
GSMUA_Achr6P36520_001	Banana	plastid	51.96	54.94
Zm00001d017247_P002	Maize	mitochondrion	51.69	54.89
Zm00001d025825_P001	Maize	mitochondrion	47.23	49.57
Zm00001d032750_P001	Maize	plastid	41.95	49.36
Zm00001d027622_P001	Maize	mitochondrion	45.87	48.99
Zm00001d014084_P001	Maize	mitochondrion	43.84	46.09
Zm00001d032753_P001	Maize	cytosol	35.72	41.12
Zm00001d007190_P001	Maize	cytosol	26.79	39.52
Zm00001d008553_P001	Maize	cytosol	26.39	39.08
Zm00001d027621_P001	Maize	cytosol	37.35	36.9
Zm00001d024886_P002	Maize	cytosol	20.43	29.26
Zm00001d024014_P001	Maize	cytosol	19.08	28.03
Zm00001d051773_P001	Maize	plasma membrane	16.91	27.23
Zm00001d004553_P001	Maize	peroxisome	26.52	26.13
Zm00001d024940_P001	Maize	peroxisome	25.71	25.78
Zm00001d036068_P001	Maize	mitochondrion, plastid	18.27	24.5
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	20.03	23.49
Zm00001d020013_P001	Maize	cytosol	16.51	23.19
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	18.0	22.09
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	18.81	22.03
Zm00001d045454_P001	Maize	plasma membrane	19.35	22.0
Zm00001d036066_P001	Maize	cytosol	18.94	21.05
Zm00001d035428_P001	Maize	mitochondrion	16.64	18.33
Zm00001d035434_P001	Maize	cytosol	10.96	17.65

Protein Annotations

EntrezGene:100382510	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	UniProt:A0A1D6HNV0	ProteinID:AQK75957.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005680	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF97	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI000221EA96	InterPro:VWF_A	InterPro:Vwaint_dom	EnsemblPlantsGene:Zm00001d018428	EnsemblPlants:Zm00001d018428_P001	EnsemblPlants:Zm00001d018428_T001
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr5:-:220579161..220583564

Molecular Weight (calculated)

78664.1 Da

IEP (calculated)

8.351

GRAVY (calculated)

-0.268

Length

739 amino acids

Sequence
(BLAST)

001: MESRWRRAKM SLGLNLCVYV PRTLEGDDAA SPSTASSTAA LVSPVASSSS AATSTDTTPT AAASNGKANG AAAAAAALMP TTPTPTSAGL RLSKSGSKSF
101: KKTCAICLTT MKPGQGHALF TAECSHTFHF HCISANVKHG SSSCPVCRIK WKELPFRGPL PAELPQGNAR INPVHGYQNG GHMTIPRPLP LPRARSFGRL
201: HHLATLLPDA DPGTFNDDEP LDLSCEEANG TQQGCLRTVE IKAYPEFTQV PENTSERNFT VLVHLKAPPA QHLLQSSSDL GDGNGVSTTR APVDLITVLD
301: VSGSMAGTKL ALLKRAMGFV IQNLGSSDRL SVIAFSSSAR RLFPLRRMTE SGRQQSLLAV NSLTANGGTN IAEGLRKGSK VIEERQSKNP VCSIILLSDG
401: QDTYTVSPTA GVHKGATEYC ALLPSTTTNG SQQVPVHVFG FGADHDSVSL HSISQTSGGT FSFIETEATI QDAFAQCIGG LLSVVAQGLH VKVESLHPDV
501: HFGSIRSGSY SSRVSDDSRN GSVDVGDLYA EEERDFLVSV NVPPGCGETA LLKVGCVYKD PLMKETVNMS GVQVKISRPA FVSAQSVSVE VDRQKNRLHA
601: AEVMAEARLS AERGDLANAV SLLEDCRRMI TGSASGQSGD RLCQALDAEL KEMQDRMASR QRYEASGRAY VLSGLSSHSW QRATARGDST DSASLVQAYQ
701: TSSMVDMLLR SQTMSRPSTP RPAPQIRHAK SFPARPQPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.