Factsheet for Zm00001d027621_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93258	Sorghum	cytosol	79.28	84.47
HORVU4Hr1G084370.1	Barley	cytosol	16.98	72.99
TraesCS2A01G358400.2	Wheat	cytosol, nucleus, peroxisome	55.08	63.09
TraesCS2B01G377900.1	Wheat	cytosol	54.14	62.69
TraesCS2D01G357400.1	Wheat	cytosol, nucleus, peroxisome	53.74	62.23
TraesCS4B01G344200.1	Wheat	cytosol	58.96	61.16
TraesCS5A01G513100.1	Wheat	cytosol, plastid	40.37	61.13
TraesCS5A01G513000.1	Wheat	cytosol	59.89	60.54
TraesCS4D01G339300.1	Wheat	cytosol	60.03	59.95
HORVU4Hr1G084330.1	Barley	cytosol	58.82	58.2
HORVU0Hr1G005150.3	Barley	cytosol, vacuole	53.74	54.77
Zm00001d032753_P001	Maize	cytosol	44.52	51.87
Zm00001d008553_P001	Maize	cytosol	33.56	50.3
Zm00001d007190_P001	Maize	cytosol	33.56	50.1
Zm00001d032750_P001	Maize	plastid	35.96	42.83
Zm00001d017247_P002	Maize	mitochondrion	39.17	42.1
Zm00001d051119_P001	Maize	nucleus	38.64	42.01
Zm00001d027622_P001	Maize	mitochondrion	37.57	40.61
Zm00001d014084_P001	Maize	mitochondrion	35.7	37.98
Zm00001d025825_P001	Maize	mitochondrion	35.7	37.93
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	36.63	37.48
Zm00001d018428_P001	Maize	mitochondrion	36.9	37.35
HORVU4Hr1G084380.2	Barley	cytosol	27.14	36.06
Zm00001d051773_P001	Maize	plasma membrane	17.38	28.32
Zm00001d024886_P002	Maize	cytosol	19.52	28.29
Zm00001d024014_P001	Maize	cytosol	18.85	28.03
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	20.32	24.09
Zm00001d036068_P001	Maize	mitochondrion, plastid	17.65	23.96
Zm00001d045454_P001	Maize	plasma membrane	20.59	23.69
Zm00001d020013_P001	Maize	cytosol	15.78	22.43
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	18.85	22.38
Zm00001d036066_P001	Maize	cytosol	19.12	21.5
Zm00001d024940_P001	Maize	peroxisome	21.12	21.44
Zm00001d004553_P001	Maize	peroxisome	21.26	21.2
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	16.58	20.6
Zm00001d035428_P001	Maize	mitochondrion	17.51	19.52
Zm00001d035434_P001	Maize	cytosol	11.23	18.3

Protein Annotations

EntrezGene:103631699	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	UniProt:A0A1D6JNC8	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	ProteinID:ONL93543.1	PFAM:PF00092	PFAM:PF14624
PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF72	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000221BB13	InterPro:VWF_A	InterPro:Vwaint_dom
EnsemblPlantsGene:Zm00001d027621	EnsemblPlants:Zm00001d027621_P001	EnsemblPlants:Zm00001d027621_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr1:+:9160553..9163106

Molecular Weight (calculated)

77493.7 Da

IEP (calculated)

5.528

GRAVY (calculated)

-0.296

Length

748 amino acids

Sequence
(BLAST)

001: MEGPEQSNPC AICLGAMGAD GGQAMATFTA ECSHTFHFHC ISASVAHGHL VCPLCNAQWR ELPSVRPSQP SSMPPMLPRQ PLPRMEPMHG VQPLPRMEPM
101: HGVQPRPVPA TQPARQPAEP EVFDDDDELE LLSGEGDQRQ AAGSGGTLAV KTHVESSAVA SGSSHDNFAV LVHVKAPGVI GSEAADGDGN RDRDRDAPRA
201: PLDLVTVLDV SGSMRGNKLA LVKQAMGFVI GSLGPHDRLS VVSFSSGARR VTRLLRMSDT GKGLASEGVE SLRAGGGTNI AEGLRTAAKV LGERRHRNAV
301: SSIILLSDGQ DNYSMPRLGR GSVPSNPNYE VLVPPSLVPG TGSTSEGSAP IHTFGFGNDH DAAAMHVVAE ATGGTFSFIE NEAVIQDAFA QCIGGLLTVV
401: AQEARVAVAC GHPGVRIRSV KSGRYESRVD EDGRSASIAV GELYADEERR FLLFLSVPTA EATGGGESER ESETLLLKVR CSYIEAAGGG ARVDVAADDT
501: VVARPEHAAA ADAERSAEVE QERARVEAVE DMAAARAAAE RGAHQEAAEI LGNRRRAMAR AAGPGGGGGG GPSNAVLRAE VRRMSRRVAN RESYERSGRA
601: YVLASLSSHA QQRATTRQLS PQRGVLQPSA GSAGGGEATN SVAAAFAPAQ AQVACAAAMD LDDADSMEFF GVGGGPAGGA ATSNAASADV ASDEAADADA
701: AASYLTPAMR AMLLRSRQAR EASGVEQQRP KGAEGAGSSG SKEVPPEQ

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.