Factsheet for Zm00001d032753_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91508	Sorghum	cytosol, plastid	88.78	88.1
TraesCS1B01G164800.1	Wheat	cytosol, nucleus, peroxisome	62.46	63.05
HORVU1Hr1G038870.1	Barley	plastid	62.31	62.6
TraesCS1D01G144900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome, plastid	62.93	59.15
Zm00001d008553_P001	Maize	cytosol	41.28	53.11
Zm00001d007190_P001	Maize	cytosol	40.81	52.3
Zm00001d027621_P001	Maize	cytosol	51.87	44.52
Zm00001d017247_P002	Maize	mitochondrion	47.04	43.39
Zm00001d051119_P001	Maize	nucleus	46.42	43.31
Zm00001d032750_P001	Maize	plastid	39.72	40.61
Zm00001d027622_P001	Maize	mitochondrion	42.99	39.88
Zm00001d025825_P001	Maize	mitochondrion	43.46	39.63
Zm00001d018428_P001	Maize	mitochondrion	41.12	35.72
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	40.5	35.57
Zm00001d014084_P001	Maize	mitochondrion	38.94	35.56
Zm00001d024886_P002	Maize	cytosol	22.27	27.71
Zm00001d024014_P001	Maize	cytosol	21.34	27.24
Zm00001d051773_P001	Maize	plasma membrane	18.69	26.14
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	22.9	23.3
Zm00001d045454_P001	Maize	plasma membrane	23.52	23.23
Zm00001d036068_P001	Maize	mitochondrion, plastid	19.63	22.87
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	19.94	20.32
Zm00001d024940_P001	Maize	peroxisome	22.74	19.81
Zm00001d020013_P001	Maize	cytosol	16.2	19.77
Zm00001d004553_P001	Maize	peroxisome	22.9	19.6
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	18.07	19.27
Zm00001d036066_P001	Maize	cytosol	19.63	18.95
Zm00001d035428_P001	Maize	mitochondrion	18.54	17.73
Zm00001d035434_P001	Maize	cytosol	12.15	16.99

Protein Annotations

EnsemblPlants:Zm00001d032753_P001	EnsemblPlants:Zm00001d032753_T001	EnsemblPlantsGene:Zm00001d032753	EntrezGene:103643483	Gene3D:3.40.50.410	InterPro:IPR002035
InterPro:IPR036465	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:vWFA_dom_sf	PANTHER:PTHR10579	PANTHER:PTHR10579:SF72
PFAM:PF00092	PFAM:PF14624	PFscan:PS50234	ProteinID:ONM05991.1	SEG:seg	SMART:SM00327
SUPFAM:SSF53300	UniParc:UPI000221841F	UniProt:A0A1D6KTT0	MapMan:35.1	:	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr1:-:237434509..237436437

Molecular Weight (calculated)

68494.0 Da

IEP (calculated)

9.348

GRAVY (calculated)

-0.329

Length

642 amino acids

Sequence
(BLAST)

001: MESNSRSNCH GDMRRTCSRS SGGVGGSGHA IFPPQCSHQD QSHSRSVSGS RIVANGLPIC ELCSARWRSL PSLRSTNPSP RQPPPSPVPS SQPFFRPMEP
101: RVFDDDDPVD RTPRPLRGDQ HRGASAEASG GAVALATHCE CSALARDASA DDFAVLVHAR ATGMAGAVGA VARAPLDLVT VLDVSGSMAG TKLELLKQAM
201: GFVIDNLGPR DRLCVVSFSS GANRLMRLAR MSDAGKSLAR RAVQSLAAGG GTNIGEALRR AAKVIDERMH RNAVASVVLL SDGQDTYTVP RRGGYGGRGA
301: NYDALVPPSF AYPGAGSRCA PVHTFGFGTD HDAAAMHTIA EATGGTFSFI EDEAAIQDAF AQCIGGLLSV TVQELRLDIA CVHPGVRLRA VKSGSYGSHI
401: DADGRSASVD VGELYADEER RFLLFLHVPR ARSADADTHT QLVRVACAYR DTATGRGKNA AGEDAKVLRP WGPVTLERSV EVERERVRVE ATHGIAAARA
501: AAERGAHAEA VEILRHRQRS VTRSAAARAG DSTCLALSRE LREMRARVAS RQQYELSGRA YVLAGLSSHA HQRATSRQVM SGGVAEATRG GESAQVRSGA
601: LETSGITMSY MTPAMLDMLG RSRRSRELLQ QRQQQTELRR TF

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.