Factsheet for Zm00001d024886_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024014_P001	Maize	cytosol	93.6	96.02
EES11757	Sorghum	cytosol	88.95	88.44
EES05180	Sorghum	mitochondrion	57.95	81.03
KXG38506	Sorghum	cytosol	51.36	78.4
Os03t0403600-01	Rice	cytosol, extracellular	40.7	50.48
TraesCS4A01G484700.1	Wheat	cytosol, unclear	47.87	47.14
TraesCS7A01G010300.1	Wheat	nucleus, unclear	47.67	46.95
TraesCS7D01G010200.1	Wheat	cytosol	47.48	46.76
HORVU7Hr1G001030.5	Barley	cytosol	47.29	46.48
TraesCS3D01G516600.1	Wheat	cytosol	43.8	43.3
TraesCS7D01G434400.1	Wheat	cytosol	42.64	42.23
TraesCS5D01G016400.1	Wheat	cytosol	38.76	41.32
HORVU5Hr1G070100.1	Barley	cytosol	41.47	40.76
HORVU5Hr1G001450.1	Barley	cytosol	41.47	40.76
TraesCS5D01G016600.1	Wheat	cytosol	41.28	40.73
TraesCS5A01G011500.1	Wheat	cytosol	39.34	40.6
TraesCS2B01G026900.1	Wheat	cytosol	47.09	40.57
TraesCS5A01G011700.1	Wheat	cytosol	40.7	39.92
HORVU5Hr1G001270.2	Barley	cytosol	27.71	39.83
Os12t0431700-00	Rice	cytosol	15.89	39.61
Os01t0640200-00	Rice	cytosol	44.96	37.06
HORVU0Hr1G036570.1	Barley	mitochondrion	25.78	34.82
TraesCS6B01G057500.1	Wheat	cytosol	29.07	29.76
Zm00001d051773_P001	Maize	plasma membrane	26.36	29.63
TraesCS7D01G418800.1	Wheat	cytosol, peroxisome, plasma membrane	40.89	28.98
Zm00001d008553_P001	Maize	cytosol	27.91	28.86
Zm00001d007190_P001	Maize	cytosol	27.91	28.74
TraesCS7A01G426800.1	Wheat	cytosol, peroxisome, plasma membrane	39.92	28.41
HORVU7Hr1G098290.1	Barley	cytosol, peroxisome, plasma membrane	39.53	28.33
TraesCS6A01G006500.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	38.76	28.29
TraesCS6D01G009300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	39.53	27.57
Zm00001d032750_P001	Maize	plastid	29.26	24.04
Zm00001d032753_P001	Maize	cytosol	27.71	22.27
Zm00001d051119_P001	Maize	nucleus	29.26	21.95
Zm00001d014084_P001	Maize	mitochondrion	29.46	21.62
Zm00001d017247_P002	Maize	mitochondrion	28.68	21.26
Zm00001d027622_P001	Maize	mitochondrion	28.49	21.24
Zm00001d036068_P001	Maize	mitochondrion, plastid	22.09	20.69
Zm00001d025825_P001	Maize	mitochondrion	28.1	20.6
Zm00001d018428_P001	Maize	mitochondrion	29.26	20.43
Zm00001d051977_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	28.29	19.97
Zm00001d027621_P001	Maize	cytosol	28.29	19.52
Zm00001d036069_P001	Maize	endoplasmic reticulum, extracellular, vacuole	23.45	19.18
Zm00001d045454_P001	Maize	plasma membrane	24.03	19.08
Zm00001d036072_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	23.06	18.89
Zm00001d045456_P001	Maize	endoplasmic reticulum, plasma membrane	21.51	18.44
Zm00001d035434_P001	Maize	cytosol	15.89	17.86
Zm00001d036066_P001	Maize	cytosol	22.48	17.44
Zm00001d035428_P001	Maize	mitochondrion	20.93	16.1
Zm00001d020013_P001	Maize	cytosol	15.12	14.83
HORVU0Hr1G022100.1	Barley	cytosol	20.35	14.6
Zm00001d024940_P001	Maize	peroxisome	19.96	13.98
Zm00001d004553_P001	Maize	peroxisome	19.96	13.73

Protein Annotations

EMBL:BT086227	EnsemblPlants:Zm00001d024886_P002	EnsemblPlants:Zm00001d024886_T002	EnsemblPlantsGene:Zm00001d024886	Gene3D:3.40.50.410	InterPro:IPR002035
InterPro:IPR036465	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:vWFA_dom_sf	ncoils:Coil	PANTHER:PTHR10579
PANTHER:PTHR10579:SF64	PFAM:PF00092	PFAM:PF14624	PFscan:PS50234	ProteinID:AQK42253.1	SEG:seg
SMART:SM00327	SUPFAM:SSF53300	UniParc:UPI0001A4C347	UniProt:C4J5Y0	MapMan:35.2	:

Description

Zinc finger (C3HC4-type RING finger) family protein

Coordinates

chr10:+:92761097..92763080

Molecular Weight (calculated)

55702.4 Da

IEP (calculated)

4.570

GRAVY (calculated)

-0.260

Length

516 amino acids

Sequence
(BLAST)

001: MSFSDDEPII PSPNSGPRPT PIVPGRVQLV SKNNNMAPLE ENTQKVLLEL TGGDSTSDRS GLDLVAVLDV SGSMQGEKIE KMKTAMKFVV KKLSSIDRLS
101: IVTFLDTANR ICPLRQVTED SQPQLLKLID ALQPGGNTNI SDGLQTGLKV LADRKLSSGR VVGVMLMSDG QQNRGEPAAN VKIGNVPVYT FGFGADYDPT
201: VLNAVARNSM GGTFSVVNDV NLLSMAFSQC LAGLLTVVVQ DLTVTVARIE DESTLQKVAA GNYPQTPDAD AGSVTVAFGD LYSKEVRKVI VDLLLPAIDS
301: DRGADILEVT YSYKTAGKLF DAPPATVTVR RSGTAFPADD PPVDVQTEEA RLKTATMIQQ ARTMADGKKL GDARDKLAEA QNALEDVVAQ SDPLLDALRT
401: ELQELLKLMK SQDVYEKQGR PYAMSSETSH DRQRFAARGD IESNRLFSTP RMDKYLEQAK KFDEDPAAPL PSADKDEEEE VAANPLAPLV GPITFYIRAA
501: VEALQAIEKL INKGAN

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.