Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004553_P001 | Maize | peroxisome | 94.71 | 93.07 |
| OQU81040 | Sorghum | peroxisome | 83.99 | 86.57 |
| Os04t0101800-01 | Rice | cytosol, mitochondrion, peroxisome, plastid | 70.56 | 75.47 |
| TraesCS2A01G045100.1 | Wheat | peroxisome | 73.54 | 71.32 |
| TraesCS2D01G043700.1 | Wheat | peroxisome | 72.73 | 70.25 |
| TraesCS2B01G057300.1 | Wheat | peroxisome | 72.86 | 69.74 |
| GSMUA_Achr4P22090_001 | Banana | nucleus | 51.15 | 52.73 |
| GSMUA_Achr4P20870_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 51.83 | 52.19 |
| GSMUA_Achr7P01890_001 | Banana | mitochondrion | 49.53 | 51.12 |
| GSMUA_Achr5P14740_001 | Banana | mitochondrion | 47.35 | 50.43 |
| VIT_07s0205g00030.t01 | Wine grape | nucleus | 44.23 | 49.7 |
| Solyc04g076860.2.1 | Tomato | nucleus | 46.68 | 45.87 |
| VIT_18s0001g08100.t01 | Wine grape | plastid | 46.95 | 45.71 |
| PGSC0003DMT400016355 | Potato | nucleus | 46.13 | 45.09 |
| PGSC0003DMT400078676 | Potato | plastid | 43.01 | 44.59 |
| Solyc02g091710.2.1 | Tomato | plastid | 43.15 | 44.29 |
| KRH74431 | Soybean | mitochondrion | 39.35 | 42.65 |
| KRH45468 | Soybean | cytosol, peroxisome | 23.2 | 42.43 |
| CDY28148 | Canola | plastid | 38.94 | 42.27 |
| KRH72527 | Soybean | nucleus | 37.04 | 41.94 |
| KRH39527 | Soybean | extracellular, golgi | 30.66 | 41.77 |
| AT5G49665.1 | Thale cress | plastid | 41.93 | 41.76 |
| KRH16916 | Soybean | nucleus | 37.18 | 40.65 |
| CDY25618 | Canola | nucleus, peroxisome, plastid | 36.36 | 40.48 |
| Bra030218.1-P | Field mustard | nucleus | 36.91 | 40.48 |
| Bra040498.1-P | Field mustard | plastid | 39.76 | 40.25 |
| KRH75634 | Soybean | nucleus | 35.01 | 39.81 |
| CDX89500 | Canola | cytosol, peroxisome, plastid | 36.09 | 39.52 |
| CDY45010 | Canola | mitochondrion, peroxisome | 38.81 | 39.29 |
| AT2G22680.1 | Thale cress | cytosol, peroxisome, plastid | 36.23 | 39.09 |
| Bra017859.1-P | Field mustard | plastid | 33.51 | 39.08 |
| CDY31616 | Canola | nucleus | 36.23 | 38.86 |
| CDX72660 | Canola | cytosol, nucleus, peroxisome, plastid | 36.09 | 38.83 |
| Bra024408.1-P | Field mustard | plastid | 35.96 | 37.43 |
| CDY08765 | Canola | plastid | 35.96 | 37.43 |
| Bra031849.1-P | Field mustard | plastid | 35.41 | 36.86 |
| CDY52535 | Canola | plastid | 35.14 | 36.48 |
| CDY45614 | Canola | plastid | 35.14 | 36.38 |
| AT4G37890.1 | Thale cress | nucleus | 36.23 | 36.13 |
| AT5G65683.1 | Thale cress | peroxisome, plastid | 34.06 | 35.01 |
| CDY37838 | Canola | plastid | 22.8 | 33.6 |
| KRH45469 | Soybean | nucleus | 8.01 | 33.33 |
| Zm00001d032750_P001 | Maize | plastid | 22.12 | 25.96 |
| Zm00001d018428_P001 | Maize | mitochondrion | 25.78 | 25.71 |
| Zm00001d051977_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 25.37 | 25.58 |
| Zm00001d014084_P001 | Maize | mitochondrion | 24.15 | 25.32 |
| Zm00001d051119_P001 | Maize | nucleus | 23.61 | 25.29 |
| Zm00001d007190_P001 | Maize | cytosol | 17.1 | 25.15 |
| Zm00001d017247_P002 | Maize | mitochondrion | 23.47 | 24.86 |
| Zm00001d008553_P001 | Maize | cytosol | 16.82 | 24.85 |
| Zm00001d027622_P001 | Maize | mitochondrion | 22.8 | 24.28 |
| Zm00001d025825_P001 | Maize | mitochondrion | 22.8 | 23.86 |
| Zm00001d020013_P001 | Maize | cytosol | 16.82 | 23.57 |
| Zm00001d032753_P001 | Maize | cytosol | 19.81 | 22.74 |
| Zm00001d027621_P001 | Maize | cytosol | 21.44 | 21.12 |
| Zm00001d024886_P002 | Maize | cytosol | 13.98 | 19.96 |
| Zm00001d024014_P001 | Maize | cytosol | 13.3 | 19.48 |
| Zm00001d051773_P001 | Maize | plasma membrane | 11.53 | 18.52 |
| Zm00001d036069_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 14.11 | 16.48 |
| Zm00001d045454_P001 | Maize | plasma membrane | 13.84 | 15.69 |
| Zm00001d036068_P001 | Maize | mitochondrion, plastid | 11.13 | 14.88 |
| Zm00001d036072_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 12.08 | 14.13 |
| Zm00001d035428_P001 | Maize | mitochondrion | 12.35 | 13.56 |
| Zm00001d036066_P001 | Maize | cytosol | 11.8 | 13.08 |
| Zm00001d045456_P001 | Maize | endoplasmic reticulum, plasma membrane | 10.45 | 12.79 |
| Zm00001d035434_P001 | Maize | cytosol | 6.92 | 11.11 |
Protein Annotations
| MapMan:26.3.1.6 | Gene3D:3.30.40.10 | Gene3D:3.40.50.410 | UniProt:A0A1D6J2X3 | ProteinID:AQK42389.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 | InterPro:IPR036465 |
| PFAM:PF13519 | PFAM:PF17123 | PFscan:PS50089 | PFscan:PS50234 | PANTHER:PTHR10579 | PANTHER:PTHR10579:SF55 |
| SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | UniParc:UPI0008437465 | InterPro:VWF_A |
| EnsemblPlantsGene:Zm00001d024940 | EnsemblPlants:Zm00001d024940_P001 | EnsemblPlants:Zm00001d024940_T001 | InterPro:Znf_PHD | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | InterPro:vWFA_dom_sf | : | : | : | : |
Description
Zinc finger (C3HC4-type RING finger) family protein
Coordinates
chr10:+:96012099..96015989
Molecular Weight (calculated)
78666.6 Da
IEP (calculated)
10.008
GRAVY (calculated)
-0.353
Length
737 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTGWRRALC TSVQRDDDPD RDASTKKRRP QQDAPSPRGT ATATGFFSAV KSAATGSSSN PSTPVLRCRT RPLQQPADPA PVTPPSAPAP ARNHRVPLMQ
101: ALSAPASPRS PSRFALLKAS LLPSKPRCGV CSRGVKSGGS SAVFTAECSH AFHFPCIAAH ARSSSANGVL SCPVCASPWR QAPFLASLRL HCSFHDDKHR
201: GGGDGRKTSP LAKLYDDDEP LLAPKATANG GGFNPIPEAD EDDEEQGAAS EFRGFFPCPR SRTTSGLAVT VAPEVALVSS GRRHGKYVVA VKVKAPGLRS
301: SSTAPRRASI DLVTVLDVSQ GMMGEKLQML KRGMRLVVAS LGPTDRLSIV AFSGAAKRLL PLRRMTRTGQ RSARQIVDRL VVCAAAATTA TATQGQQSAC
401: VGDALRKATK VLEDRRDRNP VATVMLLSDT QQQQSAAPEN SSRKQFGRPA VAPATRFTHV EIPIGPGDPP PLVSECEEEP PVEHAFAKCL GGLVSVVMQE
501: VQLELAFLTG EITAVYSCGP GQQAVAVSGG AGVSVRLGEM YAEEERELLV EVRAPLGSHP HSLSVRCTYR DPASQEAVRG AEQPLLLPAL EGERASSSSR
601: RLHDLFVATR AVAESRRLAE LQDLGTAIHL LSSARALVLQ SPPTQQQQEL VGSLDTELSD MRWRRANSQH QEVVTPTSRS GRRRGDGDTT TPVGTPRGEV
701: LTPTSAWRAA EQLAKVAIMR KSMNRVSDLH GFENARF
101: ALSAPASPRS PSRFALLKAS LLPSKPRCGV CSRGVKSGGS SAVFTAECSH AFHFPCIAAH ARSSSANGVL SCPVCASPWR QAPFLASLRL HCSFHDDKHR
201: GGGDGRKTSP LAKLYDDDEP LLAPKATANG GGFNPIPEAD EDDEEQGAAS EFRGFFPCPR SRTTSGLAVT VAPEVALVSS GRRHGKYVVA VKVKAPGLRS
301: SSTAPRRASI DLVTVLDVSQ GMMGEKLQML KRGMRLVVAS LGPTDRLSIV AFSGAAKRLL PLRRMTRTGQ RSARQIVDRL VVCAAAATTA TATQGQQSAC
401: VGDALRKATK VLEDRRDRNP VATVMLLSDT QQQQSAAPEN SSRKQFGRPA VAPATRFTHV EIPIGPGDPP PLVSECEEEP PVEHAFAKCL GGLVSVVMQE
501: VQLELAFLTG EITAVYSCGP GQQAVAVSGG AGVSVRLGEM YAEEERELLV EVRAPLGSHP HSLSVRCTYR DPASQEAVRG AEQPLLLPAL EGERASSSSR
601: RLHDLFVATR AVAESRRLAE LQDLGTAIHL LSSARALVLQ SPPTQQQQEL VGSLDTELSD MRWRRANSQH QEVVTPTSRS GRRRGDGDTT TPVGTPRGEV
701: LTPTSAWRAA EQLAKVAIMR KSMNRVSDLH GFENARF
001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF
Arabidopsis Description
WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.