Factsheet for GSMUA_Achr4P22090_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00560_001
GSMUA_Achr1P01610_001
GSMUA_Achr1P03730_001
GSMUA_Achr2P06030_001
GSMUA_Achr2P11860_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P17520_001
GSMUA_Achr2P18250_001
GSMUA_Achr3P09860_001
GSMUA_Achr3P22500_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P26960_001
GSMUA_Achr4P26970_001
GSMUA_Achr4P28510_001
GSMUA_Achr4P30100_001
GSMUA_Achr5P10290_001
GSMUA_Achr5P10300_001
GSMUA_Achr5P13770_001
GSMUA_Achr5P26130_001
GSMUA_Achr6P06410_001
GSMUA_Achr6P08880_001
GSMUA_Achr6P19560_001
GSMUA_Achr6P20920_001
GSMUA_Achr7P03170_001
GSMUA_Achr7P16760_001
GSMUA_Achr7P22470_001
GSMUA_Achr7P26720_001
GSMUA_Achr8P02810_001
GSMUA_Achr8P07910_001
GSMUA_Achr8P14860_001
GSMUA_Achr8P21300_001
GSMUA_Achr8P28400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	GSMUA_Achr3P22500_001	AT1G01050.1	21798944
AT5G65683.1	GSMUA_Achr5P26130_001	AT1G01050.1	21798944
AT5G65683.1	GSMUA_Achr6P19560_001	AT1G01050.1	21798944
AT5G65683.1	GSMUA_Achr7P03170_001	AT1G01050.1	21798944
AT5G65683.1	GSMUA_Achr8P07910_001	AT1G01050.1	21798944
AT5G65683.1	GSMUA_Achr1P03730_001	AT1G01510.1	21798944
AT5G65683.1	GSMUA_Achr2P11860_001	AT1G01510.1	21798944
AT5G65683.1	GSMUA_Achr5P10290_001	AT1G01510.1	21798944
AT5G65683.1	GSMUA_Achr5P10300_001	AT1G01510.1	21798944
AT5G65683.1	GSMUA_Achr5P13770_001	AT1G01510.1	21798944
AT5G65683.1	GSMUA_Achr1P01610_001	AT2G44950.1	21798944
AT5G65683.1	GSMUA_Achr4P26960_001	AT2G44950.1	21798944
AT5G65683.1	GSMUA_Achr4P26970_001	AT2G44950.1	21798944
AT5G65683.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT5G65683.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT5G65683.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT5G65683.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944
AT5G65683.1	GSMUA_Achr2P06030_001	AT3G24140.1	21798944
AT5G65683.1	GSMUA_Achr8P28400_001	AT3G24140.1	21798944
AT5G65683.1	GSMUA_Achr6P06410_001	AT3G48550.1	21798944
AT5G65683.1	GSMUA_Achr6P20920_001	AT3G48550.1	21798944
AT5G65683.1	GSMUA_Achr6P08880_001	AT3G54170.1	21798944
AT5G65683.1	GSMUA_Achr3P09860_001	AT3G56270.1	21798944
AT5G65683.1	GSMUA_Achr8P02810_001	AT3G56270.1	21798944
AT5G65683.1	GSMUA_Achr8P21300_001	AT3G56270.1	21798944
AT5G65683.1	GSMUA_Achr7P26720_001	AT4G17220.1	21798944
AT5G65683.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944
AT5G65683.1	GSMUA_Achr7P22470_001	AT5G43280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P01890_001	Banana	mitochondrion	73.99	74.09
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	67.27	65.71
GSMUA_Achr5P14740_001	Banana	mitochondrion	61.54	63.58
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	50.35	52.25
Zm00001d024940_P001	Maize	peroxisome	52.73	51.15
Zm00001d004553_P001	Maize	peroxisome	52.87	50.4
TraesCS2A01G045100.1	Wheat	peroxisome	52.87	49.74
VIT_07s0205g00030.t01	Wine grape	nucleus	45.17	49.24
TraesCS2D01G043700.1	Wheat	peroxisome	52.45	49.15
TraesCS2B01G057300.1	Wheat	peroxisome	52.45	48.7
OQU81040	Sorghum	peroxisome	46.71	46.71
VIT_18s0001g08100.t01	Wine grape	plastid	46.01	43.46
KRH45468	Soybean	cytosol, peroxisome	24.34	43.18
KRH39527	Soybean	extracellular, golgi	32.31	42.7
KRH74431	Soybean	mitochondrion	40.56	42.65
Solyc04g076860.2.1	Tomato	nucleus	44.48	42.4
PGSC0003DMT400078676	Potato	plastid	41.26	41.49
PGSC0003DMT400016355	Potato	nucleus	43.64	41.38
Solyc02g091710.2.1	Tomato	plastid	41.54	41.36
CDY28148	Canola	plastid	39.02	41.09
AT5G49665.1	Thale cress	plastid	41.54	40.14
KRH72527	Soybean	nucleus	36.36	39.94
KRH16916	Soybean	nucleus	37.2	39.47
Bra040498.1-P	Field mustard	plastid	39.58	38.87
CDY45010	Canola	mitochondrion, peroxisome	39.02	38.32
KRH75634	Soybean	nucleus	34.13	37.65
CDY25618	Canola	nucleus, peroxisome, plastid	34.69	37.46
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	35.8	37.37
CDY31616	Canola	nucleus	35.8	37.26
Bra030218.1-P	Field mustard	nucleus	34.83	37.05
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	35.1	36.75
Bra017859.1-P	Field mustard	plastid	32.45	36.71
CDX89500	Canola	cytosol, peroxisome, plastid	34.55	36.7
CDY08765	Canola	plastid	35.24	35.59
Bra024408.1-P	Field mustard	plastid	35.1	35.45
Bra031849.1-P	Field mustard	plastid	34.69	35.03
CDY45614	Canola	plastid	34.41	34.55
CDY52535	Canola	plastid	34.27	34.51
AT4G37890.1	Thale cress	nucleus	35.24	34.1
AT5G65683.1	Thale cress	peroxisome, plastid	33.57	33.47
KRH45469	Soybean	nucleus	7.83	31.64
CDY37838	Canola	plastid	20.84	29.8
GSMUA_Achr5P20480_001	Banana	mitochondrion	24.34	27.44
GSMUA_Achr11P...	Banana	mitochondrion	22.38	25.6
GSMUA_Achr11P...	Banana	mitochondrion	18.88	25.09
GSMUA_Achr6P36520_001	Banana	plastid	23.78	24.32
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	21.12	23.59
GSMUA_Achr2P11780_001	Banana	golgi	15.38	23.31
GSMUA_Achr9P22360_001	Banana	plastid	12.45	21.98
GSMUA_Achr4P06340_001	Banana	mitochondrion	5.73	21.35

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	ncoils:Coil	EnsemblPlantsGene:GSMUA_Achr4G22090_001	EnsemblPlants:GSMUA_Achr4P22090_001
EnsemblPlants:GSMUA_Achr4T22090_001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0SR22
PFAM:PF13519	PFAM:PF13639	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF55
SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002951D0E	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G22090_001]

Coordinates

chr4:+:22454683..22457528

Molecular Weight (calculated)

77075.7 Da

IEP (calculated)

10.826

GRAVY (calculated)

-0.421

Length

715 amino acids

Sequence
(BLAST)

001: MGTGGWKRAF CTSVRRDTDA AATRTRVEAG EKHQRSPRSC AKLSFFSGGG GSNPSTPRLA LAEAAPGLRC RTKSKTPDNK TVQCDAATSS VPTATTPRSR
101: SPALFHRQAF SAPSSPRTAS RFALFKHLSR SRCRICSLSL KASQETPVFT AECSHAFHFS CIAAHVRSHA SLACPVCSAS WRHAPFLSAL RRREDDAPEP
201: GAAGETENWN PNRRTTNGGS RNTSKGGERQ LGENRLAAGA AAAVVAAKVY DDDEPLLVVS KPNQGGDEET EDVERDDESR AGGGLVSVMP QAALLSEGRR
301: HRSYVVVLKV KAPPIGSFAP LRAPIDLVTV LNVSQGMTGE KLRMLKRAMR LVVFSLGPGD RLSIVAFSAA AGAKRLLPLR RMSRQGQRAA RQVVERLVVV
401: GGGAAARGAS VSDALRKATK VLEDRRERNP VATIMLLSDS RQQQPEQEKK GSNHHDYKPL RSPQDAFIKC VGGLVSVVMQ DVRLQLVFPS GEFSAVHPCG
501: GGGGGCEVAL RGGTSVIRLG DLYADEEREL LVELRLPVAP PGGQGGHHRL SVKCNYKDPA TQDLAFSAEQ ILLLPPLLQH HSELGRSASS SASPTTSLRL
601: RNIFVSTRAV AESRRLADLS DYATARHLLS SARALILQSA SDGRQDHHLV QNLDAELAAL QRRRRRRREA PAEVRGEPLT PTSAWRAAEQ LAKVASTRKS
701: LNRGGDLHGF ENARF

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.