Factsheet for GSMUA_Achr4P26970_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P01610_001
GSMUA_Achr3P29180_001
GSMUA_Achr4P04340_001
GSMUA_Achr4P11860_001
GSMUA_Achr4P15920_001
GSMUA_Achr4P26960_001
GSMUA_Achr4P26970_001
GSMUA_Achr5P14990_001
GSMUA_Achr6P06310_001
GSMUA_Achr7P10790_001
GSMUA_Achr8P00480_001
GSMUA_Achr8P19330_001
GSMUA_Achr9P23800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44950.1	GSMUA_Achr11P...	AT1G01630.1	21798944
AT2G44950.1	GSMUA_Achr4P15920_001	AT1G01630.1	21798944
AT2G44950.1	GSMUA_Achr8P00480_001	AT1G01630.1	21798944
AT2G44950.1	GSMUA_Achr8P19330_001	AT1G19980.1	21798944
AT2G44950.1	GSMUA_Achr6P06310_001	AT1G55250.1	18849490
AT2G44950.1	GSMUA_Achr4P11860_001	AT2G22640.1	21798944
AT2G44950.1	GSMUA_Achr9P23800_001	AT2G22640.1	21798944
AT2G44950.1	GSMUA_Achr3P29180_001	AT2G32980.1	21798944
AT2G44950.1	GSMUA_Achr5P14990_001	AT2G32980.1	21798944
AT2G44950.1	GSMUA_Achr1P01610_001	AT2G44950.1	18849490
AT2G44950.1	GSMUA_Achr4P26960_001	AT2G44950.1	18849490
AT2G44950.1	GSMUA_Achr4P26970_001	AT2G44950.1	18849490
AT2G44950.1	GSMUA_Achr10P...	AT3G10970.1	21798944
AT2G44950.1	GSMUA_Achr4P04340_001	AT3G54826.1	21798944
AT2G44950.1	GSMUA_Achr10P...	AT4G22720.1	21798944
AT2G44950.1	GSMUA_Achr7P10790_001	AT4G22720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P01610_001	Banana	nucleus	76.44	33.14
VIT_15s0021g02140.t01	Wine grape	nucleus	59.42	25.85
TraesCS3D01G362300.2	Wheat	nucleus	58.64	25.75
TraesCS3B01G401200.2	Wheat	nucleus	58.38	25.63
TraesCS6B01G274100.2	Wheat	nucleus	58.64	25.57
Solyc11g013370.1.1	Tomato	nucleus	56.28	25.38
TraesCS3A01G369300.2	Wheat	nucleus	57.59	25.29
TraesCS6A01G251200.2	Wheat	nucleus	57.85	25.23
TraesCS6D01G233000.5	Wheat	nucleus	57.59	25.11
Os04t0550400-01	Rice	nucleus	58.12	25.11
EER88892	Sorghum	cytosol	55.76	25.03
HORVU0Hr1G018210.6	Barley	nucleus	57.07	24.97
Zm00001d014640_P035	Maize	cytosol	55.24	24.53
KRH30315	Soybean	nucleus	53.66	23.32
KRH75261	Soybean	nucleus	53.4	23.18
Zm00001d036507_P003	Maize	cytosol	52.62	23.08
AT2G44950.1	Thale cress	nucleus	50.79	22.1
CDY18962	Canola	nucleus	50.0	21.88
CDY37020	Canola	nucleus	50.0	21.78
Bra040332.1-P	Field mustard	nucleus	50.0	21.73
CDX74700	Canola	nucleus	50.0	21.68
CDY27400	Canola	nucleus	49.48	21.65
Bra004879.1-P	Field mustard	nucleus	50.0	21.13
GSMUA_Achr6P06310_001	Banana	nucleus	41.1	18.03
GSMUA_Achr4P26960_001	Banana	nucleus	1.31	0.99

Protein Annotations

MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	ncoils:Coil	InterPro:E3_ubiquit_lig_Bre1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010390
GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G26970_001	EnsemblPlants:GSMUA_Achr4P26970_001	EnsemblPlants:GSMUA_Achr4T26970_001
InterPro:IPR001841	InterPro:IPR013083	UniProt:M0SSF9	PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR23163	PANTHER:PTHR23163:SF3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002955544	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	:	:	:	:

Description

E3 ubiquitin-protein ligase BRE1-like 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G26970_001]

Coordinates

chr4:+:25994858..25999249

Molecular Weight (calculated)

44510.1 Da

IEP (calculated)

6.340

GRAVY (calculated)

-0.737

Length

382 amino acids

Sequence
(BLAST)

001: MQEDEIKSLS GKSIRQLSEI KKLQSLVQDL RENNQELKLF LEMYSRESTD SRDVIESKDN EYKAWALVHS LKSSLDEHNL ESNVKAAIEA EAISQKRLTS
101: AEAEIDELSL KLEKCDREIS SLSDILKSKH EEGEAYLSEI ESIGQAYEDM QTQNQHLLQQ IIERDDYNTK LVMEGVQARQ LQEALRWEIQ TMDKKLHQAN
201: LLKDSYDLKV AQMDEQLKVW SDQVGKLAED GWQSTTAFDN TKKRFLEVQT ESYKLRQSLD GALTKVEKSR LDIADLLIEL RKERFNRKRI EESMEVMTRK
301: AAFLREQTKG STVLQKLRQE VKEYRGILKC SICHDRQKEV VITKCFHLFC HQCVQKTIDS RQRKCRTCGM SFGPNDVKSI YI

Best Arabidopsis Sequence Match ( AT2G44950.1 )
(BLAST)

001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI

Arabidopsis Description

HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.