Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 6
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... | |
| GSMUA_Achr2P09630_001 | |
| GSMUA_Achr2P13160_001 | |
| GSMUA_Achr2P18260_001 | |
| GSMUA_Achr3P08600_001 | |
| GSMUA_Achr3P22810_001 | |
| GSMUA_Achr4P05940_001 | |
| GSMUA_Achr4P12740_001 | |
| GSMUA_Achr4P19830_001 | |
| GSMUA_Achr4P23050_001 | |
| GSMUA_Achr4P28300_001 | |
| GSMUA_Achr4P32070_001 | |
| GSMUA_Achr5P02100_001 | |
| GSMUA_Achr6P31690_001 | |
| GSMUA_Achr7P00850_001 | |
| GSMUA_Achr8P07590_001 | |
| GSMUA_Achr8P22150_001 | |
| GSMUA_Achr8P33080_001 | |
| GSMUA_Achr9P09830_001 | |
| GSMUA_AchrUn_... | |
| GSMUA_AchrUn_... | |
| GSMUA_AchrUn_... | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54826.1 | GSMUA_Achr10P... | AT3G27960.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr2P09630_001 | AT3G27960.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr3P08600_001 | AT3G63460.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr8P22150_001 | AT3G63460.1 | 21798944 |
| AT3G54826.1 | GSMUA_AchrUn_... | AT3G63460.1 | 21798944 |
| AT3G54826.1 | GSMUA_AchrUn_... | AT3G63460.1 | 21798944 |
| AT3G54826.1 | GSMUA_AchrUn_... | AT3G63460.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr2P13160_001 | AT4G19700.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr4P23050_001 | AT4G19700.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr4P28300_001 | AT4G19700.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr4P32070_001 | AT4G19700.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr5P02100_001 | AT4G19700.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr6P31690_001 | AT4G19700.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr7P00850_001 | AT4G19700.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr9P09830_001 | AT4G19700.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr4P19830_001 | AT5G09590.1 | 22841711 |
| AT3G54826.1 | GSMUA_Achr4P05940_001 | AT5G10810.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr4P12740_001 | AT5G10810.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr10P... | AT5G22630.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr3P22810_001 | AT5G22630.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr8P07590_001 | AT5G22630.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr8P33080_001 | AT5G22630.1 | 21798944 |
| AT3G54826.1 | GSMUA_AchrUn_... | AT5G22630.1 | 21798944 |
| AT3G54826.1 | GSMUA_Achr2P18260_001 | AT5G51110.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34848 | Soybean | mitochondrion | 55.32 | 55.32 |
| KRG91929 | Soybean | mitochondrion | 54.26 | 53.97 |
| VIT_13s0019g04580.t01 | Wine grape | mitochondrion | 53.72 | 52.6 |
| PGSC0003DMT400069831 | Potato | mitochondrion | 54.26 | 50.25 |
| Os02t0819700-01 | Rice | mitochondrion | 50.0 | 50.0 |
| Solyc05g053250.2.1 | Tomato | mitochondrion | 51.6 | 47.78 |
| Zm00001d018501_P001 | Maize | mitochondrion | 45.21 | 45.45 |
| Bra003197.1-P | Field mustard | mitochondrion | 44.68 | 44.68 |
| TraesCS6B01G435000.1 | Wheat | mitochondrion | 45.74 | 44.56 |
| TraesCS6D01G380400.1 | Wheat | mitochondrion | 46.28 | 43.5 |
| CDY07518 | Canola | mitochondrion | 43.09 | 42.86 |
| CDX67612 | Canola | mitochondrion | 43.09 | 42.86 |
| Bra007101.1-P | Field mustard | mitochondrion | 41.49 | 39.8 |
| AT3G54826.1 | Thale cress | mitochondrion, plastid | 46.81 | 39.46 |
| HORVU6Hr1G091500.1 | Barley | mitochondrion | 45.74 | 36.29 |
| EES07768 | Sorghum | mitochondrion | 46.28 | 36.25 |
| TraesCS6A01G395100.1 | Wheat | plastid | 45.74 | 35.68 |
| CDX73445 | Canola | plastid | 42.02 | 34.2 |
| CDX78266 | Canola | plastid | 41.49 | 33.77 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P04340_001 | EnsemblPlants:GSMUA_Achr4T04340_001 | EnsemblPlantsGene:GSMUA_Achr4G04340_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| GO:GO:0046872 | InterPro:IPR007853 | InterPro:Mt_import_TIM15 | InterPro:Znf_DNL-typ | PANTHER:PTHR20922 | PANTHER:PTHR20922:SF13 |
| PFAM:PF05180 | PFscan:PS51501 | SEG:seg | UniParc:UPI0002948EC9 | UniProt:M0SL01 | MapMan:35.2 |
Description
DNL zinc finger domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G04340_001]
Coordinates
chr4:+:3401981..3404288
Molecular Weight (calculated)
20483.4 Da
IEP (calculated)
8.321
GRAVY (calculated)
-0.381
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASTARLVE RRLTSLLDRS LRSQNLLPQG YACCSCLAKG IRGVQTKTET PNIVNKDDKN SKSCQDDSKP VSNSIKTVSA IDEENNIKYR AFSSLKASTR
101: HDLAMIFTCK VCETRSVKTV CRESYEKGVV VARCGGCNNL HLIADRLGWF GEPGSVEDFL AAQGEEVKKG SVDTLNLTLE DLAGTKSS
101: HDLAMIFTCK VCETRSVKTV CRESYEKGVV VARCGGCNNL HLIADRLGWF GEPGSVEDFL AAQGEEVKKG SVDTLNLTLE DLAGTKSS
001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
Arabidopsis Description
Zim17-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4JE34]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.