Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67612 | Canola | mitochondrion | 53.81 | 63.49 |
| Bra003197.1-P | Field mustard | mitochondrion | 53.36 | 63.3 |
| CDY07518 | Canola | mitochondrion | 53.36 | 62.96 |
| Bra007101.1-P | Field mustard | mitochondrion | 51.12 | 58.16 |
| CDX73445 | Canola | plastid | 52.47 | 50.65 |
| CDX78266 | Canola | plastid | 52.02 | 50.22 |
| VIT_13s0019g04580.t01 | Wine grape | mitochondrion | 41.26 | 47.92 |
| Os02t0819700-01 | Rice | mitochondrion | 39.91 | 47.34 |
| GSMUA_Achr4P04340_001 | Banana | mitochondrion | 39.46 | 46.81 |
| Zm00001d018501_P001 | Maize | mitochondrion | 36.32 | 43.32 |
| KRH34848 | Soybean | mitochondrion | 36.32 | 43.09 |
| KRG91929 | Soybean | mitochondrion | 36.32 | 42.86 |
| TraesCS6B01G435000.1 | Wheat | mitochondrion | 36.77 | 42.49 |
| TraesCS6D01G380400.1 | Wheat | mitochondrion | 36.77 | 41.0 |
| Solyc05g053250.2.1 | Tomato | mitochondrion | 34.98 | 38.42 |
| PGSC0003DMT400069831 | Potato | mitochondrion | 34.53 | 37.93 |
| EES07768 | Sorghum | mitochondrion | 39.46 | 36.67 |
| HORVU6Hr1G091500.1 | Barley | mitochondrion | 36.77 | 34.6 |
| TraesCS6A01G395100.1 | Wheat | plastid | 36.32 | 33.61 |
Protein Annotations
| EntrezGene:2745966 | MapMan:35.2 | ProteinID:AEE79296.1 | ArrayExpress:AT3G54826 | EnsemblPlantsGene:AT3G54826 | RefSeq:AT3G54826 |
| TAIR:AT3G54826 | RefSeq:AT3G54826-TAIR-G | EnsemblPlants:AT3G54826.1 | TAIR:AT3G54826.1 | Unigene:At.47899 | UniProt:F4JE34 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006457 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008270 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030150 | GO:GO:0046872 | GO:GO:0050821 | GO:GO:0051087 |
| InterPro:IPR007853 | InterPro:Mt_import_TIM15 | RefSeq:NP_974434.2 | PFAM:PF05180 | PO:PO:0000293 | PFscan:PS51501 |
| PANTHER:PTHR20922 | PANTHER:PTHR20922:SF13 | UniParc:UPI00005DC30B | InterPro:Znf_DNL-typ | SEG:seg | : |
Description
Zim17-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4JE34]
Coordinates
chr3:+:20310269..20311854
Molecular Weight (calculated)
25005.0 Da
IEP (calculated)
9.029
GRAVY (calculated)
-0.287
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.