Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007101.1-P | Field mustard | mitochondrion | 82.68 | 97.45 |
| CDX73445 | Canola | plastid | 96.54 | 96.54 |
| CDY07518 | Canola | mitochondrion | 71.0 | 86.77 |
| CDX67612 | Canola | mitochondrion | 70.56 | 86.24 |
| AT3G54826.1 | Thale cress | mitochondrion, plastid | 50.22 | 52.02 |
| Os02t0819700-01 | Rice | mitochondrion | 37.23 | 45.74 |
| Zm00001d018501_P001 | Maize | mitochondrion | 35.06 | 43.32 |
| TraesCS6B01G435000.1 | Wheat | mitochondrion | 35.93 | 43.01 |
| KRH34848 | Soybean | mitochondrion | 33.77 | 41.49 |
| GSMUA_Achr4P04340_001 | Banana | mitochondrion | 33.77 | 41.49 |
| TraesCS6D01G380400.1 | Wheat | mitochondrion | 35.5 | 41.0 |
| KRG91929 | Soybean | mitochondrion | 32.9 | 40.21 |
| VIT_13s0019g04580.t01 | Wine grape | mitochondrion | 32.9 | 39.58 |
| Solyc05g053250.2.1 | Tomato | mitochondrion | 32.47 | 36.95 |
| PGSC0003DMT400069831 | Potato | mitochondrion | 31.6 | 35.96 |
| EES07768 | Sorghum | mitochondrion | 36.8 | 35.42 |
| HORVU6Hr1G091500.1 | Barley | mitochondrion | 35.5 | 34.6 |
| TraesCS6A01G395100.1 | Wheat | plastid | 35.5 | 34.02 |
Protein Annotations
| EnsemblPlants:CDX78266 | EnsemblPlantsGene:GSBRNA2T00129605001 | GO:A0A078CM44 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR007853 | InterPro:Mt_import_TIM15 | InterPro:Znf_DNL-typ | PANTHER:PTHR20922 | PANTHER:PTHR20922:SF13 | PFAM:PF05180 |
| PFscan:PS51501 | ProteinID:CDX78266 | ProteinID:CDX78266.1 | SEG:seg | UniParc:UPI0004EE2B4D | MapMan:35.2 |
Description
BnaA09g34610D
Coordinates
chrLK031814:+:2089100..2090176
Molecular Weight (calculated)
25631.8 Da
IEP (calculated)
9.316
GRAVY (calculated)
-0.349
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKITPNWGF LTKNKKLEAS FSTCRRRSQP EVSSMAARFL SLRRALSLYL TNQQPRLPLF QAGRLSQSKP LLSRDYAYVG LLQRHFCVSR EASEAAAVTN
101: GCCNSSNSVS ELSKAPSTSP ATTAAEDLIV KYKSQLKINP RHDFMMVFTC KVCETRSMKM ASRESYDKGV VVVRCEGCDN LHLIADRLGW FGEPGSVEEL
201: LAARGDEFKK GSMDSLSLTV DDLAGNKISN E
101: GCCNSSNSVS ELSKAPSTSP ATTAAEDLIV KYKSQLKINP RHDFMMVFTC KVCETRSMKM ASRESYDKGV VVVRCEGCDN LHLIADRLGW FGEPGSVEEL
201: LAARGDEFKK GSMDSLSLTV DDLAGNKISN E
001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
Arabidopsis Description
Zim17-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4JE34]
SUBAcon: [plastid,mitochondrion]
SUBAcon: [plastid,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.