CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68763
CDX69199
CDX72310
CDX72576
CDX74513
CDX75553
CDX75733
CDX79518
CDX82514
CDX83484
CDX84697
CDX92626
CDY01647
CDY03470
CDY08909
CDY10996
CDY13441
CDY14697
CDY17152
CDY19471
CDY20325
CDY21916
CDY22079
CDY22251
CDY23304
CDY23361
CDY24829
CDY34269
CDY36029
CDY36432
CDY37741
CDY44222
CDY44770
CDY45583
CDY47053
CDY49077
CDY53958
CDY60852
CDY66712
CDY72107

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	CDY36029	AT1G45145.1	21798944
AT4G19700.1	CDY53958	AT1G45145.1	21798944
AT4G19700.1	CDY20325	AT2G24570.1	21798944
AT4G19700.1	CDY45583	AT2G24570.1	21798944
AT4G19700.1	CDX79518	AT2G33210.1	21798944
AT4G19700.1	CDX84697	AT2G33210.1	21798944
AT4G19700.1	CDY17152	AT2G33210.1	21798944
AT4G19700.1	CDY19471	AT2G33210.1	21798944
AT4G19700.1	CDY37741	AT2G33210.1	21798944
AT4G19700.1	CDY66712	AT2G33210.1	21798944
AT4G19700.1	CDY72107	AT2G33210.1	21798944
AT4G19700.1	CDX83484	AT2G43370.1	21798944
AT4G19700.1	CDY14697	AT2G43370.1	21798944
AT4G19700.1	CDY22251	AT2G43370.1	21798944
AT4G19700.1	CDY23361	AT2G43370.1	21798944
AT4G19700.1	CDY44222	AT2G43370.1	21798944
AT4G19700.1	CDX75733	AT3G13860.1	21798944
AT4G19700.1	CDX82514	AT3G13860.1	21798944
AT4G19700.1	CDY21916	AT4G02770.1	21798944
AT4G19700.1	CDY22079	AT4G02770.1	21798944
AT4G19700.1	CDX92626	AT4G24240.1	21798944
AT4G19700.1	CDY03470	AT4G24240.1	21798944
AT4G19700.1	CDY10996	AT4G24240.1	21798944
AT4G19700.1	CDY34269	AT4G24240.1	21798944
AT4G19700.1	CDX68763	AT4G31550.1	21798944
AT4G19700.1	CDX72310	AT4G31550.1	21798944
AT4G19700.1	CDY13441	AT4G31550.1	21798944
AT4G19700.1	CDY23304	AT4G31550.1	21798944
AT4G19700.1	CDY36432	AT4G31550.1	21798944
AT4G19700.1	CDY60852	AT4G31550.1	21798944
AT4G19700.1	CDX69199	AT4G36110.1	21798944
AT4G19700.1	CDX72576	AT4G36110.1	21798944
AT4G19700.1	CDX75553	AT4G36110.1	21798944
AT4G19700.1	CDY08909	AT4G36110.1	21798944
AT4G19700.1	CDY24829	AT4G36110.1	21798944
AT4G19700.1	CDY47053	AT4G36110.1	21798944
AT4G19700.1	CDY44770	AT5G08330.1	21798944
AT4G19700.1	CDX74513	AT5G38640.1	21798944
AT4G19700.1	CDY01647	AT5G38640.1	21798944
AT4G19700.1	CDY49077	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013423.1-P	Field mustard	nucleus	96.52	93.58
CDY71607	Canola	cytosol	81.88	76.8
CDY09318	Canola	cytosol	62.02	76.07
CDY07541	Canola	cytosol	62.02	76.07
CDY21311	Canola	cytosol	62.02	76.07
CDX94520	Canola	cytosol	62.02	76.07
CDY01615	Canola	cytosol	80.84	76.07
AT4G19700.1	Thale cress	cytosol	74.91	70.72
CDY71192	Canola	cytosol	55.05	56.43
CDY26402	Canola	cytosol	57.49	55.74
CDY13070	Canola	cytosol	54.01	55.56
CDY18062	Canola	cytosol	52.61	53.55
CDY46345	Canola	cytosol	52.61	53.55
VIT_10s0042g01070.t01	Wine grape	nucleus	44.6	42.24
KRH36722	Soybean	nucleus	45.3	41.94
KRH11729	Soybean	nucleus	44.95	41.21
KRG89416	Soybean	nucleus	43.9	40.13
CDY34127	Canola	extracellular	8.36	40.0
KRH50476	Soybean	cytosol, nucleus, plastid	44.25	39.69
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	43.55	38.7
PGSC0003DMT400062617	Potato	nucleus	40.42	38.67
GSMUA_Achr5P02100_001	Banana	plastid	32.06	37.7
Solyc02g031710.2.1	Tomato	nucleus	40.07	37.1
GSMUA_Achr2P13160_001	Banana	plastid	31.71	36.84
CDX88507	Canola	nucleus	37.63	36.24
GSMUA_Achr7P00850_001	Banana	plastid	28.92	36.09
CDX87407	Canola	nucleus	39.37	35.76
GSMUA_Achr4P32070_001	Banana	nucleus	34.84	34.97
CDX79294	Canola	nucleus	36.24	34.21
GSMUA_Achr4P23050_001	Banana	nucleus	22.3	34.04
GSMUA_Achr4P28300_001	Banana	nucleus	27.87	33.2
Solyc02g069180.2.1	Tomato	plastid	31.36	31.8
CDY64561	Canola	nucleus	37.63	31.76
CDY43390	Canola	cytosol	35.89	31.69
GSMUA_Achr6P31690_001	Banana	nucleus	32.75	31.54
CDY24237	Canola	nucleus	35.54	31.48
CDX82568	Canola	nucleus	37.28	31.47
GSMUA_Achr9P09830_001	Banana	nucleus	33.45	29.91
TraesCS3B01G484600.1	Wheat	cytosol	28.57	29.82
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	24.04	28.87
TraesCS3A01G448500.1	Wheat	mitochondrion	29.27	28.67
TraesCS3D01G441300.1	Wheat	mitochondrion	28.92	28.62
TraesCS3D01G441000.1	Wheat	mitochondrion	28.92	28.62
TraesCS7D01G431300.1	Wheat	mitochondrion	30.31	27.8
TraesCS7B01G340700.1	Wheat	mitochondrion	29.97	27.56
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	28.92	27.39
HORVU4Hr1G003180.3	Barley	mitochondrion	29.27	27.36
TraesCS7A01G442100.1	Wheat	mitochondrion	29.62	27.07
TraesCS7A01G441900.1	Wheat	mitochondrion	29.62	26.9
TraesCS7A01G442300.1	Wheat	mitochondrion	29.62	26.81
TraesCS4B01G019600.1	Wheat	mitochondrion	28.92	26.77
TraesCS7D01G431200.1	Wheat	mitochondrion	28.22	26.3
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	24.74	26.2
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	27.87	26.06
HORVU6Hr1G021880.1	Barley	plastid	23.69	26.05
HORVU6Hr1G021960.1	Barley	plastid	23.69	26.05
HORVU7Hr1G100540.2	Barley	mitochondrion	27.53	25.99
TraesCS4A01G293700.1	Wheat	mitochondrion	27.87	25.97
TraesCS7B01G340600.1	Wheat	mitochondrion	28.22	25.96
TraesCS6D01G110700.1	Wheat	nucleus	23.34	25.48
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	29.27	25.45
TraesCS7B01G340500.1	Wheat	mitochondrion	27.87	25.4
EER91098	Sorghum	nucleus	31.01	25.07
CDX69109	Canola	nucleus	17.77	24.88
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	27.18	24.84
TraesCS6B01G149100.1	Wheat	nucleus	22.65	24.71
CDY52651	Canola	cytosol	18.47	23.98
TraesCS6A01G120700.1	Wheat	nucleus	21.95	23.95
CDY40647	Canola	cytosol	18.47	22.55
CDY33511	Canola	nucleus	23.69	22.44
CDX72513	Canola	cytosol	18.12	22.22
CDY23552	Canola	cytosol	16.72	22.12
CDX77733	Canola	nucleus	23.0	22.0
CDY43447	Canola	nucleus	22.65	21.52
CDX73168	Canola	cytosol	18.47	21.12
CDY15019	Canola	cytosol	18.47	21.12
CDX76311	Canola	cytosol	18.47	20.95
CDX93396	Canola	cytosol	24.39	20.83
CDY03162	Canola	cytosol	23.34	20.81
CDY51856	Canola	cytosol	21.95	20.79
CDY37958	Canola	cytosol, plastid	24.39	20.65
CDY09609	Canola	cytosol	17.77	20.65
CDY17506	Canola	cytosol, nucleus, plastid	18.12	20.55
CDY20611	Canola	nucleus	24.04	20.23
CDY37172	Canola	cytosol	21.25	20.2
CDY24542	Canola	nucleus	23.0	20.18
CDY20963	Canola	nucleus	23.69	20.12
CDX90458	Canola	cytosol	21.25	20.07
CDY17103	Canola	cytosol	20.56	19.93
Zm00001d033419_P001	Maize	plastid	18.82	19.29
CDY40841	Canola	cytosol	19.86	19.06
CDY17048	Canola	cytosol	20.56	18.97
CDY06767	Canola	cytosol	19.86	18.75

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078IS70
UniProt:A0A078IS70	EnsemblPlants:CDY51918	ProteinID:CDY51918	ProteinID:CDY51918.1	ncoils:Coil	InterPro:E3ligase_BOI_like
EnsemblPlantsGene:GSBRNA2T00004502001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089
PANTHER:PTHR42647	PANTHER:PTHR42647:SF12	SUPFAM:SSF57850	UniPathway:UPA00144	UniParc:UPI0004EEDCC8	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

BnaC01g41070DBnaC01g41070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IS70]

Coordinates

chrLK033039:+:71154..72167

Molecular Weight (calculated)

31567.6 Da

IEP (calculated)

6.644

GRAVY (calculated)

-0.235

Length

287 amino acids

Sequence
(BLAST)

001: MNIFSPRLLS NRVNFKQDMN HGEFITGETL AVDPLSNAVA KPSFNKSESG LTYNFNSFNV VPPSTKRPRV SQYLDSDAHF ASAVKLGSGP FGSPSINAEL
101: VSHIQNQQQL EIDRFVAQQT EKLRIEIEAR QQTQTQMLAS AVQTALAMKL KEKDDEILRM RNFNCVLQER VKSLFVENQI WRDIAQTNEA QANNLRTNLD
201: QVLAQIKTLP TAVENDVESS CGSCVEGGEA ITAVSGGCKR CGEREASVLV LPCRHLCLCT VCGSALLRTC PVCDSVMNAS VHVNMSS

Best Arabidopsis Sequence Match ( AT4G19700.1 )
(BLAST)

001: MAVQAHHMNI FSQFISPNRD CVKFQENMNH GEFEFTGGEV PLITGESFAV EPLAAKANFN KAESGLSYNF TVPPLSTKRQ RDFQFSDSNA PVKRRSVAFD
101: SSSPSLINVE LVSQIQNQQQ SEIDRFVAQQ TEKLRIEIEA RQQTQTRMLA SAVQNVIAKK LKEKDDEIVR IRNLNWVLQE RVKSLYVENQ IWRDIAQTNE
201: ANANTLRTNL DQVLAQLETF PTASAVVEDD AESSCGSCCG DGGGEAVTAV GGGCKRCGER EASVLVLPCR HLCLCTVCGG SALLRTCPVC DMVMNASVHV
301: NMSS

Arabidopsis Description

BOIE3 ubiquitin-protein ligase BOI [Source:UniProtKB/Swiss-Prot;Acc:O81851]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.