Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24240.1 | CDY57144 | AT3G56800.1 | 15733871 |
| AT4G24240.1 | CDY65072 | AT3G56800.1 | 15733871 |
| AT4G24240.1 | CDY00020 | AT5G28900.1 | 21798944 |
| AT4G24240.1 | CDY57012 | AT5G28900.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019239.1-P | Field mustard | nucleus | 99.14 | 98.85 |
| CDX92626 | Canola | nucleus | 96.83 | 96.55 |
| CDY03470 | Canola | nucleus | 78.39 | 80.47 |
| AT4G24240.1 | Thale cress | nucleus | 77.52 | 76.2 |
| CDY34269 | Canola | nucleus | 77.52 | 67.08 |
| VIT_18s0001g10030.t01 | Wine grape | nucleus | 49.86 | 54.23 |
| Solyc04g078550.2.1 | Tomato | nucleus | 50.72 | 50.14 |
| PGSC0003DMT400020517 | Potato | nucleus | 50.14 | 49.15 |
| CDY20325 | Canola | nucleus | 35.16 | 43.11 |
| CDY38936 | Canola | nucleus | 37.75 | 43.09 |
| CDX89558 | Canola | nucleus | 36.31 | 42.28 |
| CDY60852 | Canola | nucleus | 36.02 | 41.95 |
| CDX72310 | Canola | nucleus | 34.01 | 41.55 |
| CDX68763 | Canola | nucleus | 34.87 | 40.6 |
| CDY36432 | Canola | nucleus | 32.85 | 40.43 |
| CDY13441 | Canola | nucleus | 34.01 | 40.27 |
| CDY23304 | Canola | nucleus | 35.16 | 39.87 |
| CDY45583 | Canola | nucleus | 36.6 | 39.08 |
| CDY40667 | Canola | nucleus | 30.55 | 33.33 |
| CDX74175 | Canola | nucleus | 30.55 | 33.02 |
| CDY50747 | Canola | nucleus | 28.82 | 33.0 |
| CDX84824 | Canola | nucleus | 31.99 | 32.84 |
| CDY47130 | Canola | nucleus | 32.28 | 32.65 |
| CDY41890 | Canola | nucleus | 29.39 | 32.59 |
| CDY10749 | Canola | nucleus | 31.12 | 32.34 |
| CDY29658 | Canola | nucleus | 29.97 | 32.3 |
| CDY23988 | Canola | nucleus | 31.41 | 32.06 |
| CDX97806 | Canola | nucleus | 30.26 | 31.82 |
| CDY48658 | Canola | nucleus | 29.97 | 30.86 |
| CDX86205 | Canola | nucleus | 29.39 | 29.91 |
| CDY05601 | Canola | nucleus | 28.53 | 29.38 |
| CDY33884 | Canola | nucleus | 28.53 | 29.38 |
| CDX71933 | Canola | nucleus | 16.14 | 28.14 |
| CDX90180 | Canola | nucleus | 16.14 | 21.46 |
| CDX99806 | Canola | nucleus | 15.85 | 21.07 |
| CDY49246 | Canola | nucleus | 16.14 | 20.66 |
| CDY01962 | Canola | nucleus | 17.29 | 20.62 |
| CDY50779 | Canola | nucleus | 15.56 | 20.61 |
| CDY69417 | Canola | nucleus | 13.26 | 19.91 |
| CDY07185 | Canola | nucleus | 16.71 | 19.86 |
| CDY00583 | Canola | nucleus | 15.85 | 19.71 |
| CDX89000 | Canola | nucleus | 15.85 | 19.71 |
| CDY48511 | Canola | nucleus | 16.71 | 19.46 |
| CDX76334 | Canola | nucleus | 16.14 | 18.18 |
| CDY41375 | Canola | nucleus | 16.14 | 18.18 |
| CDY10943 | Canola | nucleus | 15.56 | 18.06 |
| CDX94201 | Canola | nucleus | 15.56 | 18.06 |
| CDY44115 | Canola | nucleus | 14.41 | 16.89 |
| CDY59336 | Canola | nucleus | 14.12 | 16.55 |
| CDX77581 | Canola | nucleus | 17.87 | 16.4 |
| CDX98217 | Canola | nucleus | 17.87 | 16.1 |
| CDX96157 | Canola | nucleus | 15.85 | 15.8 |
| CDY27045 | Canola | nucleus | 15.56 | 15.7 |
| CDY52525 | Canola | nucleus | 18.44 | 15.35 |
| CDY09551 | Canola | nucleus | 17.87 | 15.01 |
| CDY43651 | Canola | nucleus | 16.71 | 13.94 |
| CDY72268 | Canola | cytosol, plastid | 0.86 | 2.91 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078FCC4 | UniProt:A0A078FCC4 | EnsemblPlants:CDY10996 | ProteinID:CDY10996 |
| ProteinID:CDY10996.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00048941001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFAM:PF10533 | PFscan:PS50811 |
| PANTHER:PTHR31282 | PANTHER:PTHR31282:SF27 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EF00E0 | InterPro:WRKY_dom |
| InterPro:WRKY_dom_sf | InterPro:Zn-cluster-dom | SEG:seg | : | : | : |
Description
BnaA03g46550DBnaA03g46550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCC4]
Coordinates
chrLK032008:+:558980..561148
Molecular Weight (calculated)
37935.1 Da
IEP (calculated)
10.491
GRAVY (calculated)
-0.737
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVELIMSSS SYGGGKVKRE EDGGFPAEKG DTALKEAASA GIHGVQEFLK LIGQSQPTEE KQTEITAVTD VAVNSFKKVI SLLGRSRTGH ARFRRGPVTT
101: TKPEEVVVKT EEKPRTTTTT TVVLNRGKTE KHGGSAFRVY CPTPIHRRPP LSHAHHTQTK YGSSSSAPLL PNGKPHQEPP SSTIHFAPSP PVSAANSFMS
201: SHRCETESNQ MSSGFEFTNP SSQFSGSRGK PPLSSASLKR KCSSTPSGRC HCTKKRKSKV KRVIRVPAVS SKMADIPSDE FSWRKYGQKP IKGSPHPRGY
301: YKCSSMRGCP ARKHVERAPD DAMMLIVTYE GDHNHAMVLQ TPHEKTL
101: TKPEEVVVKT EEKPRTTTTT TVVLNRGKTE KHGGSAFRVY CPTPIHRRPP LSHAHHTQTK YGSSSSAPLL PNGKPHQEPP SSTIHFAPSP PVSAANSFMS
201: SHRCETESNQ MSSGFEFTNP SSQFSGSRGK PPLSSASLKR KCSSTPSGRC HCTKKRKSKV KRVIRVPAVS SKMADIPSDE FSWRKYGQKP IKGSPHPRGY
301: YKCSSMRGCP ARKHVERAPD DAMMLIVTYE GDHNHAMVLQ TPHEKTL
001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL
Arabidopsis Description
WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.