CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68763
CDX69584
CDX71815
CDX72310
CDX81722
CDX85599
CDX90227
CDX90228
CDX91066
CDX96836
CDY04096
CDY09431
CDY09432
CDY09851
CDY12101
CDY13441
CDY17659
CDY23304
CDY24091
CDY24170
CDY25849
CDY26291
CDY34693
CDY36240
CDY36432
CDY36574
CDY36943
CDY37538
CDY41170
CDY41945
CDY43274
CDY45117
CDY47525
CDY48811
CDY48812
CDY51472
CDY53304
CDY55806
CDY56997
CDY58906
CDY60212
CDY60852
CDY63670
CDY66415
CDY66796
CDY69665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28900.1	CDY04096	AT1G14900.1	21798944
AT5G28900.1	CDY09431	AT1G14900.1	21798944
AT5G28900.1	CDY09432	AT1G14900.1	21798944
AT5G28900.1	CDY17659	AT1G14900.1	21798944
AT5G28900.1	CDY36240	AT1G14900.1	21798944
AT5G28900.1	CDY48811	AT1G14900.1	21798944
AT5G28900.1	CDY48812	AT1G14900.1	21798944
AT5G28900.1	CDX81722	AT1G15570.1	21798944
AT5G28900.1	CDX96836	AT1G15570.1	21798944
AT5G28900.1	CDY36574	AT1G15570.1	21798944
AT5G28900.1	CDY53304	AT1G15570.1	21798944
AT5G28900.1	CDY66415	AT1G15570.1	21798944
AT5G28900.1	CDX90227	AT1G30120.1	21798944
AT5G28900.1	CDX90228	AT1G30120.1	21798944
AT5G28900.1	CDY26291	AT1G30120.1	21798944
AT5G28900.1	CDY51472	AT1G30120.1	21798944
AT5G28900.1	CDY63670	AT1G30120.1	21798944
AT5G28900.1	CDY24091	AT1G53510.1	21798944
AT5G28900.1	CDY25849	AT1G53510.1	21798944
AT5G28900.1	CDY45117	AT1G53510.1	21798944
AT5G28900.1	CDY60212	AT1G53510.1	21798944
AT5G28900.1	CDY47525	AT1G75400.1	21798944
AT5G28900.1	CDY69665	AT1G75400.1	21798944
AT5G28900.1	CDY34693	AT3G01180.1	21798944
AT5G28900.1	CDY37538	AT3G01180.1	21798944
AT5G28900.1	CDY43274	AT3G01180.1	21798944
AT5G28900.1	CDY55806	AT3G01180.1	21798944
AT5G28900.1	CDY24170	AT3G47620.1	21798944
AT5G28900.1	CDY36943	AT3G47620.1	21798944
AT5G28900.1	CDX71815	AT3G60360.1	21798944
AT5G28900.1	CDY41170	AT3G60360.1	21798944
AT5G28900.1	CDY56997	AT3G60360.1	21798944
AT5G28900.1	CDY58906	AT3G60360.1	21798944
AT5G28900.1	CDX68763	AT4G31550.1	21798944
AT5G28900.1	CDX72310	AT4G31550.1	21798944
AT5G28900.1	CDY13441	AT4G31550.1	21798944
AT5G28900.1	CDY23304	AT4G31550.1	21798944
AT5G28900.1	CDY36432	AT4G31550.1	21798944
AT5G28900.1	CDY60852	AT4G31550.1	21798944
AT5G28900.1	CDY12101	AT4G38770.1	21798944
AT5G28900.1	CDY41945	AT4G38770.1	21798944
AT5G28900.1	CDY66796	AT4G38770.1	21798944
AT5G28900.1	CDX69584	AT5G14390.1	21798944
AT5G28900.1	CDX85599	AT5G14390.1	21798944
AT5G28900.1	CDX91066	AT5G14390.1	21798944
AT5G28900.1	CDY09851	AT5G14390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036126.1-P	Field mustard	cytosol	100.0	100.0
CDY00020	Canola	cytosol	95.16	94.45
AT5G28900.1	Thale cress	cytosol	87.34	87.5
AT5G28850.2	Thale cress	cytosol	87.34	87.5
CDX86212	Canola	cytosol	87.52	87.36
CDY48668	Canola	cytosol	87.52	87.36
KRG97049	Soybean	cytosol	54.56	86.43
CDY71370	Canola	extracellular	37.99	85.0
GSMUA_Achr8P19010_001	Banana	cytosol	51.58	84.45
KRH68797	Soybean	cytosol	76.54	76.54
KRH34156	Soybean	cytosol	75.61	75.61
KRG92626	Soybean	cytosol	75.42	75.42
Solyc04g010070.2.1	Tomato	plastid	75.23	74.95
CDY44814	Canola	cytosol	74.12	73.7
Solyc05g054980.2.1	Tomato	cytosol	73.93	73.65
GSMUA_AchrUn_...	Banana	cytosol	74.3	73.62
GSMUA_Achr11P...	Banana	cytosol	74.12	73.57
Os10t0476600-01	Rice	cytosol, plasma membrane, plastid	72.44	71.9
EER94083	Sorghum	cytosol	71.88	71.35
TraesCS1A01G153900.1	Wheat	cytosol	71.51	70.98
HORVU1Hr1G040980.1	Barley	cytosol	71.32	70.79
TraesCS1D01G152300.1	Wheat	cytosol	71.32	70.79
TraesCS1B01G171200.1	Wheat	cytosol	71.32	70.79
Zm00001d032708_P009	Maize	cytosol	70.95	70.56
Zm00001d014037_P004	Maize	cytosol	70.95	66.38
CDX86655	Canola	cytosol	64.99	66.22
CDY13127	Canola	cytosol	64.43	65.04
CDY36971	Canola	cytosol	63.87	64.72
CDY15483	Canola	cytosol	64.25	64.61
KRG97048	Soybean	nucleus	21.79	59.39
CDY13902	Canola	cytosol	16.76	20.13
CDY58103	Canola	nucleus	17.88	19.92
CDX92599	Canola	nucleus	17.69	19.79
CDX70827	Canola	nucleus	17.32	19.75
CDX88930	Canola	nucleus	17.88	19.59
CDY02615	Canola	nucleus	17.5	19.5

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.238.220	Gene3D:1.10.238.230	MapMan:18.4.24.1.2.4	GO:A0A078J1B6	UniProt:A0A078J1B6
EnsemblPlants:CDY57012	ProteinID:CDY57012	ProteinID:CDY57012.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	EnsemblPlantsGene:GSBRNA2T00020424001	InterPro:IPR002048	PFAM:PF13202
PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR14095	PANTHER:PTHR14095:SF7	SUPFAM:SSF47473
UniParc:UPI0002541F3B	SEG:seg	:	:	:	:

Description

BnaA09g03510DBnaA09g03510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1B6]

Coordinates

chrLK033541:-:11399..14720

Molecular Weight (calculated)

62240.0 Da

IEP (calculated)

4.834

GRAVY (calculated)

-0.372

Length

537 amino acids

Sequence
(BLAST)

001: MSMVDAIDMS RVDADLLQLQ EMSSFVLTSK PGFTQSLFDQ WLSLPQAHQQ IATLLHDALA GSTLNVASGS SSAASNSIPS MFPAGSAAPP LSPRSCGSPR
101: MTRQRAGPSN LGSSLKPTTL EPAKEPMPQF YFQNGRPPPS EMKEQCMFRI NHFFYGHIDG LQIQEFKLVT REICKLPSFF STSLFKKIDV NNTGFVTREA
201: FIDYWVNGNM LIMDTTTQIF KILKQQNHNF IVKDDFKPLL KELLATHPGL EFLQTTPEFQ ERYAETVTYR IFYYINRSGN GRLTFRELRR GNLIDAMIHA
301: DQEEDINKVL RYFSYEHFYV IYCKFWELDT DHDFLIDKEN LMRYGNHALT FRIVDRIFSQ VGRKFTSKVE GKMGYEDFVY FILAEEDKSS EPSLEYWFKC
401: IDLDGNGIIT RNEMQFFYEE QLRRMECMAQ EAVLFEDILC QMIDMIGPEN ESYVTLHDLK GSKLSGNVFN ILFNLNKFMA FETRDPFLIR QERENPTLTE
501: WDRFAHREYI RLSMEEDVED ASNGSAEAWD ESLESPF

Best Arabidopsis Sequence Match ( AT5G28850.2 )
(BLAST)

001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTSKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDDS SLEAPF

Arabidopsis Description

B''BETASerine/threonine protein phosphatase 2A regulatory subunit B''beta [Source:UniProtKB/Swiss-Prot;Acc:Q5QIT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.