CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX78539
CDY08148
CDY24170
CDY36943
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	CDY24170	AT3G47620.1	21798944
AT3G01180.1	CDY36943	AT3G47620.1	21798944
AT3G01180.1	CDY08148	AT3G49580.1	21798944
AT3G01180.1	CDX70521	AT5G13810.1	21798944
AT3G01180.1	CDX78539	AT5G13810.1	21798944
AT3G01180.1	CDY67732	AT5G13810.1	21798944
AT3G01180.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34695	Canola	plastid	24.59	95.1
CDY37538	Canola	plastid	76.13	62.19
CDY43274	Canola	plastid	76.85	60.89
AT3G01180.1	Thale cress	plastid	78.66	54.92
CDY34693	Canola	endoplasmic reticulum, golgi	39.24	54.52
GSMUA_Achr1P24640_001	Banana	cytosol	17.36	48.48
PGSC0003DMT400003356	Potato	cytosol	55.7	40.16
VIT_14s0108g00940.t01	Wine grape	plastid	57.87	40.0
Solyc02g088000.2.1	Tomato	nucleus, plastid	55.52	39.97
TraesCS6D01G287000.1	Wheat	plastid	46.29	38.61
TraesCS6B01G336400.1	Wheat	plastid	46.84	38.43
TraesCS6A01G307800.1	Wheat	plastid	46.65	38.17
HORVU6Hr1G075950.4	Barley	plastid	46.47	38.07
Os02t0744700-01	Rice	nucleus	46.11	37.67
EES05532	Sorghum	plastid	47.56	37.36
Zm00001d052263_P001	Maize	plastid	47.2	37.29
Zm00001d018033_P001	Maize	plastid	45.57	36.63
OQU91730	Sorghum	cytosol	44.85	36.26
TraesCS1A01G137200.1	Wheat	plastid	48.28	35.55
TraesCS1B01G155700.3	Wheat	plastid	47.74	35.53
TraesCS1D01G138100.2	Wheat	plastid	48.1	35.42
Os10t0437600-00	Rice	plastid	46.84	34.58
CDY71840	Canola	plastid	18.81	34.44
KXG19644	Sorghum	plastid	47.38	34.03
Zm00001d037234_P005	Maize	plastid	46.29	33.91
Zm00001d014150_P005	Maize	plastid	47.2	33.72
TraesCS7B01G093800.2	Wheat	plastid	48.64	33.71
TraesCS7A01G189000.1	Wheat	plastid	48.1	33.42
TraesCS7D01G190100.1	Wheat	plastid	48.28	33.42
Os06t0229800-01	Rice	plastid	47.74	32.59
HORVU1Hr1G035960.19	Barley	cytosol, plastid	47.2	32.5
HORVU7Hr1G038420.1	Barley	plastid	47.74	30.84
CDX73274	Canola	plastid	20.07	29.06
CDX88091	Canola	plastid	27.67	23.5
CDX80428	Canola	plastid	27.49	23.35
CDY08902	Canola	plastid	19.71	10.69
CDX76534	Canola	plastid	19.71	10.69
CDY45619	Canola	plastid	11.21	9.41
CDY21007	Canola	plastid	18.08	9.41
CDY31209	Canola	plastid	18.08	9.33
CDY49799	Canola	mitochondrion	17.9	9.12
CDX97980	Canola	plastid	17.72	8.98
CDY08760	Canola	plastid	10.49	8.45
CDY21006	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY55806	EnsemblPlantsGene:GSBRNA2T00017362001	Gene3D:3.40.50.2000	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21	MetaCyc:PWY-622
PANTHER:PTHR12526	PANTHER:PTHR12526:SF542	PFAM:PF08323	ProteinID:CDY55806	ProteinID:CDY55806.1	SEG:seg
SUPFAM:SSF53756	UniParc:UPI0004EEF526	UniPathway:UPA00164	UniProt:A0A078J1L6	MapMan:35.1	:

Description

BnaCnng29150DBnaCnng29150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1L6]

Coordinates

chrLK033429:-:32525..35876

Molecular Weight (calculated)

61304.4 Da

IEP (calculated)

7.609

GRAVY (calculated)

-0.387

Length

553 amino acids

Sequence
(BLAST)

001: MASSVTESSF PILCQIKSQP RVTWRSVVRV SFPDFASGSL SFRRRSFVVG QRWKFVSCVG SDSSGAASGG DDEQQEDALQ ATIDKSKKVL DMQRNLLHQI
101: AERRKLVSSI KDTTPNLDHG KPSANEDYGS SSSSVSANTD AIKKEENGNG SASSSSYGKS SLNKVPEANK TSPLLERSKL SSASSPATSP EKEKPSGVAS
201: RGKPWSSVTE EYMETKEEKT HEEEASSDTV RDEEKPPPLA GANVMNVILV AAECAPFSKT TPLVILFDCG LGDVAGALPK ALARRGHRVM VVVPRYAEYE
301: EAKDVGVRKR YKVAGQDMEV MYFHAYIDGV DFVFIDSPVL RHLSNNIYGG NRLDILKRMV LFCKAAVEVP WYVPCGGVCY GDGNLAFIAN DWHTALLPVY
401: LKAYYRDHGL MKYTRSVLVI HNIAHQGRGP VDDFSYVDLP GHYLDSFKLY DPVGGEHFNI FAAGLKAADR VLTVSHGYSW EVRAVRFKPA LRDEVWNRSA
501: GKLIHALGNC VLTYREYKES WEGLQRRGMI QDLSWDNAAE KYEEVLVAAK YHW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.