Factsheet for HORVU1Hr1G035960.19

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	HORVU6Hr1G075650.1	AT3G47620.1	21798944
AT3G01180.1	HORVU7Hr1G038130.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G155700.3	Wheat	plastid	88.04	95.15
TraesCS1D01G138100.2	Wheat	plastid	88.04	94.14
TraesCS1A01G137200.1	Wheat	plastid	87.8	93.87
KRH01182	Soybean	cytosol	25.65	77.44
Os10t0437600-00	Rice	plastid	68.0	72.9
CDY34695	Canola	plastid	12.95	72.73
OQU91730	Sorghum	cytosol	60.4	70.91
Zm00001d014150_P005	Maize	plastid	68.0	70.54
Bra021486.1-P	Field mustard	endoplasmic reticulum	17.43	66.35
CDY43274	Canola	plastid	51.56	59.31
CDY37538	Canola	plastid	49.32	58.49
GSMUA_Achr6P23190_001	Banana	cytosol	51.93	57.28
HORVU6Hr1G075950.4	Barley	plastid	47.82	56.89
KRH18473	Soybean	plastid	52.43	54.25
KRG93537	Soybean	plastid	51.56	53.49
PGSC0003DMT400003356	Potato	cytosol	50.44	52.8
VIT_14s0108g00940.t01	Wine grape	plastid	52.55	52.75
Solyc02g088000.2.1	Tomato	nucleus, plastid	50.31	52.6
AT3G01180.1	Thale cress	plastid	51.81	52.53
GSMUA_Achr1P24650_001	Banana	mitochondrion	51.06	52.03
Bra039138.1-P	Field mustard	plastid	49.81	51.88
KRH15937	Soybean	plastid	7.72	47.69
CDY55806	Canola	plastid	32.5	47.2
HORVU7Hr1G038420.1	Barley	plastid	48.19	45.21
HORVU7Hr1G025390.4	Barley	cytosol, plastid	30.01	41.91
Bra021487.1-P	Field mustard	cytosol	17.68	38.27
HORVU7Hr1G012380.5	Barley	plastid	27.15	36.15
HORVU2Hr1G090980.3	Barley	plastid	26.65	36.09
CDY34693	Canola	endoplasmic reticulum, golgi	17.19	34.67
HORVU1Hr1G080950.5	Barley	plastid	21.67	18.2
HORVU2Hr1G106410.9	Barley	cytosol	21.67	13.09
HORVU1Hr1G021590.5	Barley	mitochondrion	21.42	10.8
HORVU0Hr1G005550.1	Barley	cytosol	0.87	3.57
HORVU0Hr1G005540.2	Barley	cytosol	2.37	1.88

Protein Annotations

EnsemblPlants:HORVU1Hr1G035960.19	EnsemblPlantsGene:HORVU1Hr1G035960	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0016740	HAMAP:MF_00484	InterPro:GS/SS	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21	PANTHER:PTHR12526
PANTHER:PTHR12526:SF542	PFAM:PF08323	PFAM:PF13692	SEG:seg	SUPFAM:SSF53756	TIGRFAMs:TIGR02095
UniParc:UPI000B470E57	UniProt:A0A287F4G0	MapMan:3.2.2.4.2	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:240530428..240546464

Molecular Weight (calculated)

88893.8 Da

IEP (calculated)

6.643

GRAVY (calculated)

-0.427

Length

803 amino acids

Sequence
(BLAST)

001: HGGVVTSEPE KSLTPLPSSP ISSLQSPPSP HTREFGSAPE QQHAGSEWEP SSGRSLPMAA TSPSFFAPPP AALIRHGASP RPTAAASPFS SCHCHGRLQR
101: PSVRAPRRRP AAARPVRFRV NGVYGWPAVL RGWTKRGSRK GLCAAGAHDD AVNQVGEDVD HDDNGVRVSN EALRATIRKS REVLARHRDL LDQQLIQISE
201: KKKLISIIEA SSIHNEQEPS SGSPFSRPGA VSEGEEIGYD LQMYLDRRSQ KSEIRSTHGE SISGQHEYYG SLEGKLSNTD VNGSYSKDYE RGHSVTEEIN
301: DNSSSSAAVE DMNIILVAAE CAPWSKTGGL GDVAGALPKA LSKRGHRVMA IVPMYGNYEE PHQIGEPKRY QVAGQDMEVK YHHAYIDGVD FVFIDNPIFH
401: NVESEIYGGD RTDILKRMIL LCKAAVEAPW CVPCGGFCYG DGNLVFIAND WHTALLPVYL KAYYRDNGFM IYARSVLVIH NIAHQGRGSL DDFSYLDLPS
501: NYMDLFKHHD PFGGDHLNIF AAGIKAADRL LTVSHGYAWE LKTPEGGWGL HGIINESDWK FQGIVNGIDT TDWNPRCDVH LKSDGYCNYS LETVEAGKAQ
601: CKAALQRELG LPVRGDVPVI AFIGRLENQK GVDLIAEAMP WITGQDVQVI LLGTGRQDLE DTLRRLESQH YDRVRGWVGF SVRLAHRMTA GADVLLMPSR
701: FEPCGLNQLY AMMYGTVPVV HAVGGLRDTV QPYNPYEEAG LGWTFENAEA NRMIDALGHC LNTYRNYKSS WEGLRRRGMV QDLSWDTAAK RYEEVLVAAK
801: YQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.