Factsheet for GSMUA_Achr1P24650_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P24090_001	Banana	cytosol	28.68	75.08
GSMUA_Achr6P23190_001	Banana	cytosol	63.58	68.82
OQU91730	Sorghum	cytosol	49.87	57.46
GSMUA_Achr1P24640_001	Banana	cytosol	14.34	57.07
Os10t0437600-00	Rice	plastid	52.92	55.67
GSMUA_Achr4P10220_001	Banana	plastid	54.44	55.14
TraesCS1B01G155700.3	Wheat	plastid	51.52	54.64
TraesCS1A01G137200.1	Wheat	plastid	52.03	54.59
TraesCS1D01G138100.2	Wheat	plastid	51.78	54.33
Zm00001d014150_P005	Maize	plastid	52.03	52.97
HORVU1Hr1G035960.19	Barley	cytosol, plastid	52.03	51.06
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	10.79	36.48
GSMUA_Achr1P06140_001	Banana	plastid	28.17	36.04
GSMUA_Achr3P03290_001	Banana	plastid	31.22	35.6
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	27.41	35.06
GSMUA_Achr9P20780_001	Banana	plastid	26.9	34.53
GSMUA_Achr1P16610_001	Banana	plastid	11.93	30.82
GSMUA_Achr1P16620_001	Banana	cytosol	8.63	30.36
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	7.99	28.51
GSMUA_Achr8P27560_001	Banana	plastid	22.72	19.04
GSMUA_Achr3P16340_001	Banana	plastid	14.85	15.96
GSMUA_Achr5P00700_001	Banana	plastid	20.81	14.64
GSMUA_Achr11P...	Banana	plastid	9.64	7.47

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	EnsemblPlantsGene:GSMUA_Achr1G24650_001	EnsemblPlants:GSMUA_Achr1P24650_001
EnsemblPlants:GSMUA_Achr1T24650_001	InterPro:Glyco_trans_1	UniProt:M0S2S2	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323
PANTHER:PTHR12526	PANTHER:PTHR12526:SF542	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI0002966367
SEG:seg	:	:	:	:	:

Description

Granule-bound starch synthase 2, chloroplastic/amyloplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G24650_001]

Coordinates

chr1:+:19095459..19104836

Molecular Weight (calculated)

87915.3 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.281

Length

788 amino acids

Sequence
(BLAST)

001: MRLRLLFSNT RRNHISYNGS ACTVRFLNAV YHGLLVGLVP NTQKNGRLLL GVGRSISSER QEDSDEDDRE ITVNTIQTAI VLSKEVLTIQ RSLLNQIVER
101: REIASSTKDS VGTKEKEPAS YNQSNSSFSN LDGGNNGELQ RTNDSWTSSD YVQSTEAGIV DEVEEPINGS EVEQSMADAL GLLREANLEQ SQLTEQTTDV
201: QSTEAGVVNE VEEPISGLEV QQSMADALGL LRETNLEQSQ PHVTLPVLPD KSNSYVMKDE NLEVSAVTIV QALDEQQEES PKQGIFDSSP VANPNAMNVI
301: VVAAECAPWS KTGGLGDVVG ELPKALARRG HRVMVVAPKY GNYAEPKGVG VLKRYKVDGQ DLEVTYYHAY IDCVDFVFID SPVFRHIEND IYGGNRRDIL
401: KRMVLLCRAA VEVPWHIPCG GVCYGDGNLV FIANDWHTSL LPVYLKAYYR DMGLMKYARC VLVIHNIAYQ GRGPVDDFSL VDLPDHYLDL FKFYDPVGGE
501: HFNIFAAGLK TADRVVTVSH GYAWELKTPE GGWGLHEIIS DNDWKFRGIV NGISTESWNP NSDVYLTSDG YTNFSLETLQ LGKAQCKAAL QRELGLPVLG
601: DVPIIAFIGR LDYQKGVDLI AEARPWLVGQ DLQIVMLGTG RRDLEDMIRG IESAHRDKAR AWIGFSVKMA HRITAGADIL LMPSRFEPCG LNQLYAMMYG
701: TVPVVHSVGG LRDTVQQFDP LNDVGLGWTF ERAEANRMIQ ALQHCLDTYR NHKKSWERLQ VRGMIQDLSW DNAAQRYEEV LIAAKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.