Factsheet for GSMUA_Achr1P06140_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	82.14	82.14
GSMUA_Achr9P20780_001	Banana	plastid	80.19	80.46
GSMUA_Achr1P16610_001	Banana	plastid	38.31	77.38
GSMUA_Achr1P16620_001	Banana	cytosol	26.95	74.11
VIT_02s0025g02790.t01	Wine grape	plastid	69.48	70.74
Solyc08g083320.2.1	Tomato	plastid	68.99	70.6
PGSC0003DMT400031568	Potato	plastid	69.48	70.51
VIT_15s0048g02600.t01	Wine grape	plastid	69.64	69.87
KRG92546	Soybean	plastid	67.69	68.93
KRH34245	Soybean	plastid	67.53	68.42
KRH06370	Soybean	nucleus, plastid	68.67	68.34
KRH47803	Soybean	nucleus	68.02	67.69
HORVU7Hr1G012380.5	Barley	plastid	66.23	67.66
TraesCS4A01G418200.1	Wheat	plastid	66.23	67.44
TraesCS7A01G070100.1	Wheat	plastid	66.07	67.38
Zm00001d033937_P002	Maize	plastid	66.56	67.32
Zm00001d045462_P001	Maize	plastid	66.56	67.32
EER87785	Sorghum	plastid	66.07	66.94
TraesCS7D01G064300.1	Wheat	plastid	65.58	66.89
Os06t0133000-02	Rice	plastid	65.91	66.67
AT1G32900.1	Thale cress	plastid	65.91	66.56
CDY71840	Canola	plastid	32.63	66.56
CDX73274	Canola	plastid	35.23	56.81
Bra010189.1-P	Field mustard	nucleus	66.07	55.6
GSMUA_Achr8P24090_001	Banana	cytosol	20.13	41.2
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	12.66	33.48
GSMUA_Achr1P24640_001	Banana	cytosol	10.06	31.31
GSMUA_Achr4P10220_001	Banana	plastid	37.82	29.95
GSMUA_Achr6P23190_001	Banana	cytosol	34.74	29.4
GSMUA_Achr3P03290_001	Banana	plastid	32.31	28.8
GSMUA_Achr1P24650_001	Banana	mitochondrion	36.04	28.17
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	9.58	26.7
GSMUA_Achr8P27560_001	Banana	plastid	27.44	17.98
GSMUA_Achr3P16340_001	Banana	plastid	17.37	14.6
GSMUA_Achr5P00700_001	Banana	plastid	24.03	13.21
GSMUA_Achr11P...	Banana	plastid	10.55	6.39

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	EnsemblPlantsGene:GSMUA_Achr1G06140_001	EnsemblPlants:GSMUA_Achr1P06140_001
EnsemblPlants:GSMUA_Achr1T06140_001	InterPro:Glyco_trans_1	UniProt:M0RXH2	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323
PANTHER:PTHR12526	PANTHER:PTHR12526:SF452	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI0002962CAB
SEG:seg	:	:	:	:	:

Description

Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G06140_001]

Coordinates

chr1:-:4944737..4949750

Molecular Weight (calculated)

67731.4 Da

IEP (calculated)

7.721

GRAVY (calculated)

-0.150

Length

616 amino acids

Sequence
(BLAST)

001: MAAVMASRFI SRTSCSSYGG AFDSEAMTFQ SRRVPYLSTH ATTYEGLRTR NVVDSRQMQL NAKATSRQAR RGTRHASHRP WAIVVCGSGM NLVFVGAEVA
101: PWSKTGGLGD VLGGLPPAMA ANGHRVMTVA PRYDQYKDGW DTGVLVELKV GDRTETVRFF HCYKRGVDRV FVDHPMFLEK VWGKTGGKIY GPVTGTDFED
201: NQLRFSLLCQ AALEAPRVLH FNNSKYHSGP YGEDVVFIAN DWHTALLPCY LKTMYQSHGI YKNAKVAFCI HNIAYQGRFA YSDFARLNLP DKFKSSFDFI
301: DGYDKPVKGR KINWMKAGII ESDRVLTVSP YYAQELVSGV EKGVELDNIL RMTGITGIVN GMDTNEWNPS TDKYISANYD ATTVMDAKPL NKEALQAEVG
401: LPVDPNIPVI AFIGRLEEQK GSDILASAIP EFIDEDVQVV VLGTGKKKLE RQLALLETMF PDKVRAHLKF NVPLAHGIMA GADILAVTSR FEPCGLIQLQ
501: AMQYGIPPMC STTGGLVDTV KEGCTGFHMG PFSVECAVAD KADVQKVVKT VKRALKVYGT PAFAEMIQNC MAQDLSWKGP AKKWEQFLLS LGAANSEPGI
601: DGEEVAPLAV ENVAAP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.