Factsheet for VIT_02s0025g02790.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g02600.t01	Wine grape	plastid	75.87	74.76
KRG92546	Soybean	plastid	72.89	72.89
KRH34245	Soybean	plastid	72.4	72.04
AT1G32900.1	Thale cress	plastid	72.56	71.97
CDY71840	Canola	plastid	35.54	71.19
GSMUA_Achr1P06140_001	Banana	plastid	70.74	69.48
HORVU2Hr1G090980.3	Barley	plastid	65.62	66.95
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	67.6	66.4
EER87785	Sorghum	plastid	66.45	66.12
Zm00001d045462_P001	Maize	plastid	66.45	66.01
Zm00001d033937_P002	Maize	plastid	66.45	66.01
Os07t0412100-01	Rice	plastid	66.12	65.79
TraesCS2B01G390700.1	Wheat	plastid	64.96	65.61
TraesCS2A01G373600.1	Wheat	plastid	64.96	65.61
TraesCS2D01G369800.1	Wheat	plastid	64.79	65.44
Os06t0133000-02	Rice	plastid	65.62	65.19
EER98410	Sorghum	plastid	65.29	65.07
HORVU7Hr1G012380.5	Barley	plastid	64.79	65.01
GSMUA_Achr9P20780_001	Banana	plastid	65.62	64.66
TraesCS4A01G418200.1	Wheat	plastid	64.13	64.13
TraesCS7D01G064300.1	Wheat	plastid	63.8	63.91
TraesCS7A01G070100.1	Wheat	plastid	63.64	63.74
Zm00001d019479_P004	Maize	plastid	65.62	63.42
GSMUA_Achr1P16610_001	Banana	plastid	31.57	62.62
CDX73274	Canola	plastid	38.18	60.47
Bra010189.1-P	Field mustard	nucleus	72.4	59.84
GSMUA_Achr1P16620_001	Banana	cytosol	21.32	57.59
Zm00001d029360_P001	Maize	cytosol	23.31	56.4
Zm00001d033690_P001	Maize	cytosol, plastid	31.07	55.29
Zm00001d027242_P002	Maize	plastid	42.98	44.37
VIT_16s0098g01780.t01	Wine grape	plastid	35.04	33.49
VIT_14s0108g00940.t01	Wine grape	plastid	37.02	28.0
VIT_11s0065g00150.t01	Wine grape	plastid	22.48	22.48
VIT_07s0205g00090.t01	Wine grape	plastid	6.28	17.35
VIT_10s0003g02880.t01	Wine grape	plastid	26.28	15.73
VIT_07s0205g00110.t01	Wine grape	cytosol, nucleus	11.74	14.61
VIT_10s0116g01730.t01	Wine grape	plastid	24.79	9.82

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:100264969	wikigene:100264969	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	ProteinID:CCB58309
ProteinID:CCB58309.1	UniProt:F6HU86	EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009569	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS
InterPro:Glyco_trans_1	EntrezGene:LOC100264969	wikigene:LOC100264969	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323
PANTHER:PTHR12526	PANTHER:PTHR12526:SF383	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGR:TC60387	TIGR:TC70204
TIGRFAMs:TIGR02095	UniParc:UPI0001982D11	ArrayExpress:VIT_02s0025g02790	EnsemblPlantsGene:VIT_02s0025g02790	EnsemblPlants:VIT_02s0025g02790.t01	unigene:Vvi.5331
RefSeq:XP_002279034	RefSeq:XP_002279034.1	RefSeq:XP_010660257.1	RefSeq:XP_010660260.1	SEG:seg	:

Description

Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:F6HU86]

Coordinates

chr2:-:2418048..2426185

Molecular Weight (calculated)

66143.8 Da

IEP (calculated)

7.862

GRAVY (calculated)

-0.085

Length

605 amino acids

Sequence
(BLAST)

001: MATLTASHFV SRTSHVNGTQ ESSGSETKSL AQIGLRGQRA THNGLRRLSA RTTVGRSKGY KSENGKGLPS GAIVCRSGMN LVFVGCEVGP WSKTGGLGDV
101: LGGLPPAMAA RGHRVMSVSP RYDQYKDAWD TCVVVEIPVG DRIETVRFFH CYKRGVDRVF VDHPWFLEKV WGKTGSKIYG PSAGVDYIDN QMRFSLFCQA
201: VLEAPRILNL NSSKYFSGPY GEDVVFIAND WHTAILPCYL KSMYQSSGIY RNAKVVFCIH NIAYQGRFAF SDFGFLNLPD RFKSSFDFMD GYKKPVKGRK
301: INWMKAGILE ADRVVTVSPY YAEELVSGEA KGVELDNIIR KATITGIVNG MDVQEWNPST DKHIGIHYNA TTVMDAKALL KEALQAEVGL PVDRNIPLIG
401: FIGRLEEQKG SDILAAAIPK FIDEDVQIVV LGTGKKAMEK QIEQLEIKYP NKAIGVAKFN VSLAHMITAG ADFMLIPSRF EPCGLIQLHA MRYGTVPICA
501: ATGGLVDTVK EGFTGFHMGP FNVECDRIDP ADVDAVAITV KRALATYGTA ALGEMIQNCM ALDLSWKGPS KNWEELLLSL GPAGCQPGIE GEEIAPLAKE
601: NVATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.