Factsheet for Os06t0133000-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
extracellular 1

Predictors

GFP

MS/MS

Papers

plastid: 15807780

plastid: 15069638
plastid: 27992503

gfp PMID: 15807780 doi

Y Kawagoe, A Kubo, H Satoh, F Takaiwa, Y Nakamura

Department of Plant Biotechnology, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305 8602, Japan.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87785	Sorghum	plastid	83.25	83.39
HORVU7Hr1G012380.5	Barley	plastid	82.27	83.08
Zm00001d045462_P001	Maize	plastid	82.92	82.92
Zm00001d033937_P002	Maize	plastid	82.92	82.92
TraesCS4A01G418200.1	Wheat	plastid	81.28	81.82
TraesCS7D01G064300.1	Wheat	plastid	80.95	81.62
TraesCS7A01G070100.1	Wheat	plastid	80.62	81.29
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	67.82	67.05
GSMUA_Achr1P06140_001	Banana	plastid	66.67	65.91
VIT_02s0025g02790.t01	Wine grape	plastid	65.19	65.62
GSMUA_Achr9P20780_001	Banana	plastid	64.04	63.52
VIT_15s0048g02600.t01	Wine grape	plastid	63.71	63.19
Solyc08g083320.2.1	Tomato	plastid	62.23	62.96
KRH34245	Soybean	plastid	62.56	62.66
KRG92546	Soybean	plastid	62.23	62.64
PGSC0003DMT400031568	Potato	plastid	62.4	62.6
Os07t0412100-01	Rice	plastid	62.4	62.5
AT1G32900.1	Thale cress	plastid	62.07	61.97
KRH06370	Soybean	nucleus, plastid	61.41	60.42
KRH47803	Soybean	nucleus	61.08	60.1
GSMUA_Achr1P16610_001	Banana	plastid	29.06	58.03
CDY71840	Canola	plastid	28.74	57.95
GSMUA_Achr1P16620_001	Banana	cytosol	20.2	54.91
Bra010189.1-P	Field mustard	nucleus	62.56	52.05
CDX73274	Canola	plastid	31.03	49.48
Os06t0160700-01	Rice	plastid	33.17	31.51
Os02t0744700-01	Rice	nucleus	33.0	29.69
Os10t0437600-00	Rice	plastid	33.99	27.64
Os06t0229800-01	Rice	plastid	34.15	25.68
Os05t0533600-02	Rice	plastid	24.96	16.54
Os01t0720600-01	Rice	plastid	25.78	16.1
Os04t0624600-01	Rice	plastid	24.3	12.17
Os08t0191433-01	Rice	plastid	22.99	9.01
Os02t0807100-01	Rice	plastid	4.27	8.39

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	PDB:3VUE	PDB:3VUF	EntrezGene:4340018
ProteinID:AAA33918.1	ProteinID:AAC61675.2	ProteinID:AAF72561.1	ProteinID:AAF72562.1	ProteinID:AAO33149.1	EMBL:AB066093
EMBL:AB066094	ProteinID:ACJ86366.1	ProteinID:ACJ86369.1	ProteinID:ACU82441.1	ProteinID:ACU82446.1	ProteinID:ACY56268.1
ProteinID:ACY56269.1	ProteinID:ACY56270.1	EMBL:AF515480	EMBL:AF515481	EMBL:AF515482	EMBL:AF515483
ProteinID:AII21926.1	EMBL:AK070431	UniProt:B7EHV0	ProteinID:BAB19379.1	ProteinID:BAF18618.1	ProteinID:BAJ16183.1
ProteinID:BAJ16184.1	ProteinID:BAS95999.1	ProteinID:CAA37732.1	ProteinID:CAA41186.1	ProteinID:EEE65034.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011
GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0016757	GO:GO:0019252	GO:GO:0019863	GO:GO:0033840	GO:GO:0043531	GO:GO:0102502
InterPro:GS/SS	InterPro:Glyco_trans_1	EMBL:KT199369	HAMAP:MF_00484	EnsemblPlantsGene:Os06g0133000	EnsemblPlants:Os06t0133000-02
PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF452	UniProt:Q0DEV5	SUPFAM:SSF53756
InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI0000000800	EMBL:X62134	RefSeq:XP_015644490.1	RefSeq:XP_015644491.1
RefSeq:XP_015644492.1	SEG:seg	:	:	:	:

Description

GLUTINOUS ENDOSPERMGranule-bound starch synthase I, chloroplast precursor (EC 2.4.1.21). (Os06t0133000-01);Granule-bound starch synthase 1, Starch biosynthesis (Os06t0133000-02)

Coordinates

chr6:+:1766470..1770653

Molecular Weight (calculated)

66479.9 Da

IEP (calculated)

8.224

GRAVY (calculated)

-0.190

Length

609 amino acids

Sequence
(BLAST)

001: MSALTTSQLA TSATGFGIAD RSAPSSLLRH GFQGLKPRSP AGGDATSLSV TTSARATPKQ QRSVQRGSRR FPSVVVYATG AGMNVVFVGA EMAPWSKTGG
101: LGDVLGGLPP AMAANGHRVM VISPRYDQYK DAWDTSVVAE IKVADRYERV RFFHCYKRGV DRVFIDHPSF LEKVWGKTGE KIYGPDTGVD YKDNQMRFSL
201: LCQAALEAPR ILNLNNNPYF KGTYGEDVVF VCNDWHTGPL ASYLKNNYQP NGIYRNAKVA FCIHNISYQG RFAFEDYPEL NLSERFRSSF DFIDGYDTPV
301: EGRKINWMKA GILEADRVLT VSPYYAEELI SGIARGCELD NIMRLTGITG IVNGMDVSEW DPSKDKYITA KYDATTAIEA KALNKEALQA EAGLPVDRKI
401: PLIAFIGRLE EQKGPDVMAA AIPELMQEDV QIVLLGTGKK KFEKLLKSME EKYPGKVRAV VKFNAPLAHL IMAGADVLAV PSRFEPCGLI QLQGMRYGTP
501: CACASTGGLV DTVIEGKTGF HMGRLSVDCK VVEPSDVKKV AATLKRAIKV VGTPAYEEMV RNCMNQDLSW KGPAKNWENV LLGLGVAGSA PGIEGDEIAP
601: LAKENVAAP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.