Factsheet for GSMUA_Achr1P16610_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71840	Canola	plastid	55.08	55.63
CDX73274	Canola	plastid	59.02	47.12
GSMUA_Achr1P06140_001	Banana	plastid	77.38	38.31
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	70.82	35.06
GSMUA_Achr9P20780_001	Banana	plastid	70.16	34.85
Solyc08g083320.2.1	Tomato	plastid	62.95	31.89
PGSC0003DMT400031568	Potato	plastid	63.28	31.8
VIT_02s0025g02790.t01	Wine grape	plastid	62.62	31.57
AT1G32900.1	Thale cress	plastid	61.31	30.66
KRG92546	Soybean	plastid	60.33	30.41
HORVU7Hr1G012380.5	Barley	plastid	59.67	30.18
KRH34245	Soybean	plastid	59.34	29.77
TraesCS4A01G418200.1	Wheat	plastid	59.02	29.75
Zm00001d033937_P002	Maize	plastid	59.02	29.56
Zm00001d045462_P001	Maize	plastid	59.02	29.56
TraesCS7D01G064300.1	Wheat	plastid	58.03	29.3
TraesCS7A01G070100.1	Wheat	plastid	58.03	29.3
VIT_15s0048g02600.t01	Wine grape	plastid	58.69	29.15
Os06t0133000-02	Rice	plastid	58.03	29.06
EER87785	Sorghum	plastid	57.7	28.95
KRH47803	Soybean	nucleus	58.03	28.59
KRH06370	Soybean	nucleus, plastid	57.38	28.27
Bra010189.1-P	Field mustard	nucleus	62.3	25.96
GSMUA_Achr1P24640_001	Banana	cytosol	16.39	25.25
GSMUA_Achr3P03290_001	Banana	plastid	28.85	12.74
GSMUA_Achr4P10220_001	Banana	plastid	31.48	12.34
GSMUA_Achr6P23190_001	Banana	cytosol	28.52	11.95
GSMUA_Achr1P24650_001	Banana	mitochondrion	30.82	11.93
GSMUA_Achr3P16340_001	Banana	plastid	21.31	8.87
GSMUA_Achr8P27560_001	Banana	plastid	22.62	7.34
GSMUA_Achr11P...	Banana	plastid	18.03	5.41
GSMUA_Achr5P00700_001	Banana	plastid	19.02	5.18
GSMUA_Achr8P24090_001	Banana	cytosol	4.26	4.32
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	0.98	1.29
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	0.0	0.0
GSMUA_Achr1P16620_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr1P16610_001	EnsemblPlants:GSMUA_Achr1T16610_001	EnsemblPlantsGene:GSMUA_Achr1G16610_001	Gene3D:3.40.50.2000	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21
PANTHER:PTHR12526	PANTHER:PTHR12526:SF383	PFAM:PF08323	SEG:seg	SUPFAM:SSF53756	UniParc:UPI0002968937
UniProt:M0S0G9	MapMan:35.1	:	:	:	:

Description

Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G16610_001]

Coordinates

chr1:+:12389750..12391382

Molecular Weight (calculated)

34185.9 Da

IEP (calculated)

9.965

GRAVY (calculated)

-0.298

Length

305 amino acids

Sequence
(BLAST)

001: MAAVTASHFV SNRSRSAYNG AFDSEPVKFQ SFRIPYLSSR AAAHEGLRSR NVVDSLQMQQ NSKASSEKAT RGSRRSTRKP WAVVVCRSRM NLVFVGAEVA
101: PWSKTGGLGD VLGGLPPAMA ANGHRVMTVA PRYDQYRDAW DTSIMVELKV GGSIETVHFF HCHKNGVDRV FLDHPMFLEK VWGKTGGKIY GPLAGTDYED
201: NQIRFSLLCQ AALQAPRVLH LNNREDVVLV ANNWHTALLP CYLETMYQSH SIYKNARSIV LLDQFKSSFD FIDGYDKPVK GRKIRMKAGI LESDRFVTVS
301: PYYAQ

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.