Factsheet for TraesCS7D01G064300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
plastid: 22160430
golgi: 25769308
nucleus: 26579155

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G418200.1	Wheat	plastid	97.02	96.86
TraesCS7A01G070100.1	Wheat	plastid	95.86	95.86
HORVU7Hr1G012380.5	Barley	plastid	94.87	95.02
EER87785	Sorghum	plastid	81.95	81.41
Zm00001d045462_P001	Maize	plastid	81.79	81.12
Zm00001d033937_P002	Maize	plastid	81.79	81.12
Os06t0133000-02	Rice	plastid	81.62	80.95
GSMUA_Achr1P06140_001	Banana	plastid	66.89	65.58
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	65.89	64.61
GSMUA_Achr9P20780_001	Banana	plastid	64.9	63.84
VIT_02s0025g02790.t01	Wine grape	plastid	63.91	63.8
Solyc08g083320.2.1	Tomato	plastid	62.75	62.96
PGSC0003DMT400031568	Potato	plastid	63.24	62.93
KRG92546	Soybean	plastid	61.92	61.82
VIT_15s0048g02600.t01	Wine grape	plastid	62.42	61.4
KRH34245	Soybean	plastid	61.76	61.35
KRH47803	Soybean	nucleus	62.25	60.74
AT1G32900.1	Thale cress	plastid	61.09	60.49
KRH06370	Soybean	nucleus, plastid	61.92	60.42
TraesCS2D01G369800.1	Wheat	plastid	59.44	59.93
CDY71840	Canola	plastid	29.3	58.61
GSMUA_Achr1P16610_001	Banana	plastid	29.3	58.03
GSMUA_Achr1P16620_001	Banana	cytosol	19.04	51.34
Bra010189.1-P	Field mustard	nucleus	62.09	51.23
CDX73274	Canola	plastid	31.79	50.26
TraesCS6D01G287000.1	Wheat	plastid	34.44	31.37
TraesCS7D01G117800.1	Wheat	plastid	33.44	30.84
TraesCS1D01G138100.2	Wheat	plastid	35.43	28.5
TraesCS7D01G190100.1	Wheat	plastid	35.43	26.78
TraesCS1D01G356900.1	Wheat	plastid	25.5	16.87
TraesCS2D01G468900.2	Wheat	endoplasmic reticulum, golgi	25.5	10.98
TraesCS1D01G100100.1	Wheat	cytosol	23.51	8.8

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004373	GO:GO:0005488	GO:GO:0016740	GO:GO:0019863	GO:GO:0043531	InterPro:GS/SS
InterPro:Glyco_trans_1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF452
SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	EnsemblPlantsGene:TraesCS7D01G064300	EnsemblPlants:TraesCS7D01G064300.1	TIGR:cd03791
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:35596364..35599225

Molecular Weight (calculated)

66273.0 Da

IEP (calculated)

7.611

GRAVY (calculated)

-0.137

Length

604 amino acids

Sequence
(BLAST)

001: MAALVTSQLA TSGTVLGITD RFRRAGFQGV RPRSPADAAL GMRTVGASAA PTQSRKAHRG TRRCLSMVVR ATGSGGMNLV FVGAEMAPWS KTGGLGDVLG
101: GLPPAMAANG HRVMVISPRY DQYKDAWDTS VVSEIKVVDK YERVRYFHCY KRGVDRVFVD HPCFLEKVRG KTKEKIYGPD AGTDYEDNQQ RFSLLCQAAL
201: EVPRILNLDN NPYFSGPYGE DVVFVCNDWH TGLLACYLKS NYQSNGIYRA AKVAFCIHNI SYQGRFSFDD FAQLNLPDRF KSSFDFIDGY DKPVEGRKIN
301: WMKAGILQAD KVLTVSPYYA EELISGEARG CELDNIMRLT GITGIVNGMD VSEWDPTKDK FLAVNYDITT ALEGKALNKE ALQAEVGLPV DRKVPLVAFI
401: GRLEEQKGPD VMIAAIPEIL KEEDVQIVLL GTGKKKFERL LKSIEEKFPS KVRAVVRFNA PLAHQMMAGA DVLAVTSRFE PCGLIQLQGM RYGTPCACAS
501: TGGLVDTIVE GKTGFHMGRL SVDCNVVEPA DVKKVVTTLK RAVKVVGTPA YHEMVKNCMI QDLSWKGPAK NWEDVLLELG VEGSEPGVIG EEIAPLAMEN
601: VAAP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.