CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47803	Soybean	nucleus	97.42	97.42
VIT_15s0048g02600.t01	Wine grape	plastid	74.15	74.76
Solyc08g083320.2.1	Tomato	plastid	70.27	72.26
KRG92546	Soybean	plastid	69.95	71.57
PGSC0003DMT400031568	Potato	plastid	70.11	71.5
KRH34245	Soybean	plastid	69.95	71.22
Os07t0412100-01	Rice	plastid	67.85	69.08
GSMUA_Achr1P06140_001	Banana	plastid	68.34	68.67
EER98410	Sorghum	plastid	66.72	68.04
HORVU2Hr1G090980.3	Barley	plastid	65.11	67.96
TraesCS2D01G369800.1	Wheat	plastid	64.94	67.11
TraesCS2A01G373600.1	Wheat	plastid	64.94	67.11
TraesCS2B01G390700.1	Wheat	plastid	64.78	66.94
Zm00001d019479_P004	Maize	plastid	67.04	66.29
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	65.11	65.42
GSMUA_Achr9P20780_001	Banana	plastid	63.97	64.5
EER87785	Sorghum	plastid	62.36	63.49
Zm00001d033937_P002	Maize	plastid	62.2	63.22
Zm00001d045462_P001	Maize	plastid	62.2	63.22
HORVU7Hr1G012380.5	Barley	plastid	61.07	62.69
TraesCS4A01G418200.1	Wheat	plastid	60.74	62.15
TraesCS7D01G064300.1	Wheat	plastid	60.42	61.92
TraesCS7A01G070100.1	Wheat	plastid	60.26	61.76
Os06t0133000-02	Rice	plastid	60.42	61.41
Zm00001d029360_P001	Maize	cytosol	23.59	58.4
GSMUA_Achr1P16620_001	Banana	cytosol	20.84	57.59
GSMUA_Achr1P16610_001	Banana	plastid	28.27	57.38
Zm00001d033690_P001	Maize	cytosol, plastid	30.69	55.88
Zm00001d027242_P002	Maize	plastid	43.3	45.73
KRH01182	Soybean	cytosol	19.39	45.11
KRH53506	Soybean	plastid	32.96	32.18
KRH64431	Soybean	plastid	32.63	31.03
KRH18473	Soybean	plastid	36.67	29.25
KRG93537	Soybean	plastid	36.19	28.94
KRH16258	Soybean	extracellular	5.98	27.21
KRH15937	Soybean	plastid	5.65	26.92
KRH39530	Soybean	cytosol	9.85	22.18
KRH74428	Soybean	plastid	19.22	17.4
KRH58438	Soybean	nucleus	27.14	16.99
KRH42312	Soybean	nucleus	26.98	16.87
KRH51091	Soybean	plastid	26.49	15.16
KRH11434	Soybean	plastid	26.49	14.07
KRH20852	Soybean	plastid	26.01	14.01

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:100817424	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	EMBL:ACUP02009827	EnsemblPlantsGene:GLYMA_16G018500
GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058
GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757
GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1	UniProt:I1MKC8	ProteinID:KRH06369.1	EnsemblPlants:KRH06370
ProteinID:KRH06370	ProteinID:KRH06370.1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526
PANTHER:PTHR12526:SF383	MetaCyc:PWY-622	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI000233AA8F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:1643418..1648032

Molecular Weight (calculated)

68113.2 Da

IEP (calculated)

7.073

GRAVY (calculated)

-0.095

Length

619 amino acids

Sequence
(BLAST)

001: MATLTASSNL VSRNSHVHHG PTTASYESKA VAMGLRSLKQ TNTHSGLRIF NPVDELLNRT PIKTNAMQAM RKGPQGKNVW PKGIITCGMT FIIIGTEVAP
101: WCKTGGLGDV LGGLPPALAG FGHRVMTIVP RYDQYKDAWD TGVVIEVKVG DRTEKVRFFH CYKRGVDRVF VDHPWFLEKV WGKTGQKLYG PTTGDDYEDN
201: QLRFSLFCQA ALEAPRVLSL NSSKYFSGPY GEDVIFVAND WHTALIPCYL KSMYQPRGIY MNARVVFCIH NIAYQGRFAF ADFSLLNLPD QFKSSFDFID
301: GHVKPVVGRK INWLKAGLIE SWFVITVSPN YAKELVSGPD KGVELDNILR KIDDDGRLVG IVNGMDVQEW NPTTDKYIAV KYDVSTVLEA KALLKEALQA
401: EVGLPVDRNI PLIGFIGRLE EQKGSDILAE AIPQFIKENV QLVALGTGKK QMEKQLQELE ISYPDKARGV AKFNVPLAHM IIAGADFILV PSRFEPCGLI
501: QLQAMRYGSV PIVASTGGLV DTVKEGFTGF QMGAFSVECD AVDPADVDAI AKTVKRALAV YGTPAFTEII KNCMAQDLSW KGPAKKWEEV LLSLGVPGSE
601: PGSDGEEIAP QAKENVATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.