CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021486.1-P	Field mustard	endoplasmic reticulum	40.0	24.64
GSMUA_Achr1P24640_001	Banana	cytosol	32.31	21.21
KRH01182	Soybean	cytosol	40.0	19.55
CDY34695	Canola	plastid	13.85	12.59
TraesCS6B01G336400.1	Wheat	plastid	50.0	9.64
TraesCS6D01G287000.1	Wheat	plastid	48.46	9.5
HORVU6Hr1G075950.4	Barley	plastid	49.23	9.48
TraesCS6A01G307800.1	Wheat	plastid	49.23	9.47
Os02t0744700-01	Rice	nucleus	48.46	9.31
Zm00001d018033_P001	Maize	plastid	49.23	9.3
Zm00001d052263_P001	Maize	plastid	49.23	9.14
EES05532	Sorghum	plastid	49.23	9.09
KRH18473	Soybean	plastid	53.85	9.02
KRG93537	Soybean	plastid	53.08	8.91
Zm00001d037234_P005	Maize	plastid	51.54	8.87
OQU91730	Sorghum	cytosol	46.15	8.77
PGSC0003DMT400003356	Potato	cytosol	51.54	8.74
Solyc02g088000.2.1	Tomato	nucleus, plastid	51.54	8.72
VIT_14s0108g00940.t01	Wine grape	plastid	53.08	8.62
KXG19644	Sorghum	plastid	50.77	8.57
TraesCS1A01G137200.1	Wheat	plastid	48.46	8.39
TraesCS1B01G155700.3	Wheat	plastid	47.69	8.34
TraesCS7A01G189000.1	Wheat	plastid	50.0	8.17
TraesCS7B01G093800.2	Wheat	plastid	50.0	8.15
TraesCS7D01G190100.1	Wheat	plastid	50.0	8.14
TraesCS1D01G138100.2	Wheat	plastid	46.92	8.12
Os10t0437600-00	Rice	plastid	46.15	8.01
Zm00001d014150_P005	Maize	plastid	47.69	8.01
Os06t0229800-01	Rice	plastid	49.23	7.9
HORVU1Hr1G035960.19	Barley	cytosol, plastid	47.69	7.72
HORVU7Hr1G038420.1	Barley	plastid	49.23	7.48
KRH53506	Soybean	plastid	33.08	6.78
KRH64431	Soybean	plastid	33.08	6.61
KRG92546	Soybean	plastid	27.69	5.95
KRH34245	Soybean	plastid	26.92	5.76
KRH06370	Soybean	nucleus, plastid	26.92	5.65
KRH47803	Soybean	nucleus	26.92	5.65
KRH74428	Soybean	plastid	13.08	2.49
KRH58438	Soybean	nucleus	17.69	2.33
KRH42312	Soybean	nucleus	16.92	2.22
KRH16258	Soybean	extracellular	2.31	2.21
KRH51091	Soybean	plastid	16.15	1.94
KRH20852	Soybean	plastid	16.92	1.91
KRH11434	Soybean	plastid	16.92	1.89
KRH39530	Soybean	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02008730	EnsemblPlants:KRH15937	EnsemblPlantsGene:GLYMA_14G120500	Gene3D:3.40.50.2000	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21
MetaCyc:PWY-622	PANTHER:PTHR12526	PANTHER:PTHR12526:SF371	PFAM:PF08323	ProteinID:KRH15937	ProteinID:KRH15937.1
SUPFAM:SSF53756	UniParc:UPI000295FE4B	UniProt:K7M778	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr14:+:17096279..17096845

Molecular Weight (calculated)

14725.9 Da

IEP (calculated)

9.050

GRAVY (calculated)

0.088

Length

130 amino acids

Sequence
(BLAST)

001: MVKIGNDYSR FVVPGNLTSI SSAFMIKQRS LPYQAPNMTT WGHLHFHLSE ITTFESLLIV PWHVPCGGVC YGDGNQALIA NDWHTALPPV YLKAYYRDHG
101: LMKYTRSVLV IHNIAHQVHS LSRYIVSSLL

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.