Factsheet for TraesCS7D01G190100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT3G01180.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G093800.2	Wheat	plastid	95.49	95.61
TraesCS7A01G189000.1	Wheat	plastid	95.12	95.48
HORVU7Hr1G038420.1	Barley	plastid	91.49	85.4
KRH01182	Soybean	cytosol	25.66	77.07
KXG19644	Sorghum	plastid	69.34	71.95
Zm00001d037234_P005	Maize	plastid	65.96	69.8
CDY34695	Canola	plastid	12.02	67.13
Os06t0229800-01	Rice	plastid	66.21	65.31
Bra021486.1-P	Field mustard	endoplasmic reticulum	17.02	64.45
TraesCS6D01G287000.1	Wheat	plastid	53.32	64.25
CDY43274	Canola	plastid	51.56	59.03
CDY37538	Canola	plastid	49.44	58.35
KRG93537	Soybean	plastid	52.57	54.26
KRH18473	Soybean	plastid	52.07	53.61
Bra039138.1-P	Field mustard	plastid	50.81	52.66
Solyc02g088000.2.1	Tomato	nucleus, plastid	50.56	52.6
PGSC0003DMT400003356	Potato	cytosol	50.31	52.41
AT3G01180.1	Thale cress	plastid	51.94	52.4
VIT_14s0108g00940.t01	Wine grape	plastid	52.19	52.12
KRH15937	Soybean	plastid	8.14	50.0
TraesCS1D01G138100.2	Wheat	plastid	46.56	49.53
CDY55806	Canola	plastid	33.42	48.28
Bra021487.1-P	Field mustard	cytosol	20.53	44.2
CDY34693	Canola	endoplasmic reticulum, golgi	19.4	38.94
TraesCS7D01G117800.1	Wheat	plastid	31.54	38.47
TraesCS7D01G064300.1	Wheat	plastid	26.78	35.43
TraesCS2D01G369800.1	Wheat	plastid	25.03	33.39
TraesCS1D01G356900.1	Wheat	plastid	22.15	19.39
TraesCS2D01G468900.2	Wheat	endoplasmic reticulum, golgi	21.4	12.19
TraesCS1D01G100100.1	Wheat	cytosol	20.65	10.23

Protein Annotations

EnsemblPlants:TraesCS7D01G190100.1	EnsemblPlantsGene:TraesCS7D01G190100	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0016740	HAMAP:MF_00484	InterPro:GS/SS	InterPro:Glyco_trans_1	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21
PANTHER:PTHR12526	PANTHER:PTHR12526:SF371	PFAM:PF00534	PFAM:PF08323	SEG:seg	SUPFAM:SSF53756
TIGR:cd03791	TIGRFAMs:TIGR02095	MapMan:3.2.2.4.2	:	:	:

Description

No Description!

Coordinates

chr7D:-:144130513..144137287

Molecular Weight (calculated)

86949.6 Da

IEP (calculated)

6.599

GRAVY (calculated)

-0.394

Length

799 amino acids

Sequence
(BLAST)

001: MSSAVASAAS FLALASASPG RSRRRARVSA QPPHAGAGRL HWPPWPPQRT ARDGAVAALA AGKKDAGIDD AAASVRQPRA LRGGAATKVA ERRDPVKTLD
101: RDAAEGGGPS PPAARQDAAR PPSMNGMPVN GENKSTGGGG ATKDSGLPTP ARAPHPSTQN RAPVNGENKA NVASPPTSIA EAAASDSAAT ISISDKAPES
201: VVPAEKTPPS SGSNFESSAS APGSDTVSDV EQELKKGAVV VEEAPKPKAL SPPAAPAVQE DLWDFKKYIG FEEPVEAKDD GRAVADDAGS FEHHQNHDSG
301: PLAGENVMNV VVVAAECSPW CKTGGLGDVA GALPKALAKR GHRVMVVVPR YGDYEEAYDV GVRKYYKAAG QDMEVNYFHA YIDGVDFVFI DAPLFRHRQE
401: DIYGGSRQEI MKRMILFCKA AVEVPWHVPC GGVPYGDGNL VFIANDWHTA LLPVYLKAYY RDHGLMQYTR SIMVIHNIAH QGRGPVDEFP FTELPEHYLE
501: HFRLYDPVGG EHANYFAAGL KMADQVVVVS PGYLWELKTV EGGWGLHDII RQNDWKTRGI VNGIDNMEWN PEVDAHLKSD GYTNFSLRTL DSGKRQCKEA
601: LQRELGLQVR ADVPLLGFIG RLDGQKGVEI IADAMPWIVS QDVQLVMLGT GRHDLESMLQ HFEREHHDKV RGWVGFSVRL AHRITAGADA LLMPSRFEPC
701: GLNQLYAMAY GTVPVVHAVG GLRDTVPPFD PFNHSGLGWT FDRAEAHKLI EALGHCLRTY RDFKESWRAL QERGMSQDFS WEHAAKLYED VLVKAKYQW

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.