CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	EER88112	AT3G47620.1	21798944
AT3G01180.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037234_P005	Maize	plastid	88.05	89.8
KRH01182	Soybean	cytosol	27.01	78.2
CDY34695	Canola	plastid	13.25	71.33
TraesCS7B01G093800.2	Wheat	plastid	72.34	69.8
TraesCS7A01G189000.1	Wheat	plastid	72.08	69.72
TraesCS7D01G190100.1	Wheat	plastid	71.95	69.34
Bra021486.1-P	Field mustard	endoplasmic reticulum	18.31	66.82
Os06t0229800-01	Rice	plastid	69.35	65.93
HORVU7Hr1G038420.1	Barley	plastid	70.91	63.78
EES05532	Sorghum	plastid	57.79	63.21
CDY43274	Canola	plastid	53.64	59.17
CDY37538	Canola	plastid	51.3	58.35
KRG93537	Soybean	plastid	53.64	53.36
OQU91730	Sorghum	cytosol	47.27	53.22
Solyc02g088000.2.1	Tomato	nucleus, plastid	52.99	53.12
KRH18473	Soybean	plastid	53.51	53.09
PGSC0003DMT400003356	Potato	cytosol	52.6	52.8
AT3G01180.1	Thale cress	plastid	53.9	52.4
Bra039138.1-P	Field mustard	plastid	52.21	52.14
VIT_14s0108g00940.t01	Wine grape	plastid	54.03	52.0
KRH15937	Soybean	plastid	8.57	50.77
CDY55806	Canola	plastid	34.03	47.38
Bra021487.1-P	Field mustard	cytosol	20.78	43.13
KXG19354	Sorghum	plastid	32.86	39.1
CDY34693	Canola	endoplasmic reticulum, golgi	19.61	37.94
EER87785	Sorghum	plastid	27.53	34.87
EER98410	Sorghum	plastid	26.75	33.94
OQU78343	Sorghum	plastid	22.08	18.7
KXG31317	Sorghum	plastid	13.64	15.04
KXG27148	Sorghum	mitochondrion, plastid	20.78	13.43
KXG24650	Sorghum	plastid	21.69	9.92

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	UniProt:A0A194YI48	GO:GO:0003674	GO:GO:0003824
GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1
EnsemblPlants:KXG19644	ProteinID:KXG19644	ProteinID:KXG19644.1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323
PANTHER:PTHR12526	PANTHER:PTHR12526:SF371	MetaCyc:PWY-622	EnsemblPlantsGene:SORBI_3010G093400	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom
TIGRFAMs:TIGR02095	UniParc:UPI0007F28A8B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:8300126..8304244

Molecular Weight (calculated)

83756.4 Da

IEP (calculated)

6.581

GRAVY (calculated)

-0.235

Length

770 amino acids

Sequence
(BLAST)

001: MSSAAVSSAS STFFLALASS ASPGGRRRAR VGSPPFHTGA GPNFAFWRAP PRVPRDAALV RAEAEGGGKD APPERSGDAA AAAASRLPRA ARRKAVSKRR
101: DPLQPVGRYG SSGTGNTARS GAATASTQNA ALAAVEIKSI VAAPPTSIVK FPAPGYRVIL PSGDIAPETV VPAPKPLPLH GSPGANSVRP ASIPDPDTHG
201: DVELAEKKPA QVDGDYSNGV APPPAEPVVQ EATWDFKKYI GFEEPVEAKD DSGVAADGAD SFEHYENNDS GPLAGENVMN VIVVAAECSP WCKTGGLGDV
301: VGALPKALAR RGHRVMVVVP RYGDYVEAFD MGIRKYYKAA GQDLEVNYFH AFIDGVDFVF IDAPLFRHRQ NDIYGGSRQE ILKRMILFCK VAVEVPWHVP
401: CGGVCYGDGN LVFIANDWHT ALLPVYLKAY YRDHGLMQYT RSILVIHNIA HQGRGPVAEF PYMDLPEHYL QHFELYDPVG GEHANIFAAG LKMADRVVTV
501: SRGYLWELKT VEGGWGLHDI IRSNDWKING IVNGIDHQEW NPKVDVHLRS DGYTNYSLET LDAGKRQCKA ALQRELGLEV RDDVPLLGFI GRLDGQKGVD
601: IIGDAMPWIA GQDVQLVMLG TGRADLERML QHLEREHPSK VRGWVGFSVP MAHRITAGAD VLVMPSRFEP CGLNQLYAMA YGTVPVVHAV GGLRDTVAPF
701: DPFGDAGLGW TFDRAEVNKL IEALRHCLDT YRNYGESWKS IQARGMAQDL SWDHAAELYE DVLVKAKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.