CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010821_P002	Maize	plastid	93.29	93.29
TraesCS1A01G353300.1	Wheat	cytosol	63.59	84.26
TraesCS1D01G356900.1	Wheat	plastid	78.33	77.98
TraesCS1B01G368500.1	Wheat	plastid	78.33	77.98
Os05t0533600-02	Rice	plastid	76.46	75.63
HORVU1Hr1G080950.5	Barley	plastid	77.34	73.54
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	17.27	71.04
Os01t0720600-01	Rice	plastid	66.89	62.36
GSMUA_Achr8P27560_001	Banana	plastid	57.21	55.32
GSMUA_Achr3P16340_001	Banana	plastid	43.56	54.02
VIT_10s0003g02880.t01	Wine grape	plastid	57.98	52.13
PGSC0003DMT400021444	Potato	plastid	57.21	51.95
Solyc02g071040.2.1	Tomato	nucleus	57.1	51.85
KRH58438	Soybean	nucleus	56.33	51.77
KRH42312	Soybean	nucleus	56.0	51.41
CDY08902	Canola	plastid	56.11	50.0
CDX76534	Canola	plastid	56.11	50.0
Bra021017.1-P	Field mustard	plastid	56.0	49.9
AT4G18240.1	Thale cress	plastid	55.89	48.85
KXG31317	Sorghum	plastid	22.0	28.65
EER98410	Sorghum	plastid	17.38	26.03
EER87785	Sorghum	plastid	17.16	25.66
EES05532	Sorghum	plastid	19.14	24.72
KXG19354	Sorghum	plastid	17.38	24.42
OQU91730	Sorghum	cytosol	17.6	23.39
KXG19644	Sorghum	plastid	18.7	22.08
KXG27148	Sorghum	mitochondrion, plastid	27.39	20.91
KXG24650	Sorghum	plastid	26.73	14.43

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.4	Gene3D:3.40.50.2000	EntrezGene:8068976	UniProt:C5YUG2	ncoils:Coil
ProteinID:EES18558.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005982	GO:GO:0008150	GO:GO:0008152
GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1	HAMAP:MF_00484
EnsemblPlants:OQU78343	ProteinID:OQU78343	ProteinID:OQU78343.1	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526
PANTHER:PTHR12526:SF539	EnsemblPlantsGene:SORBI_3009G209300	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI0001A88C69
RefSeq:XP_002440128.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:55613968..55622092

Molecular Weight (calculated)

103116.0 Da

IEP (calculated)

6.455

GRAVY (calculated)

-0.375

Length

909 amino acids

Sequence
(BLAST)

001: MSCSAAAGAE AAALLFRSPA PCTIAGRHRL AVSRRTPRRN LRTGVQPHQK STPSANHRNR ASIQRDRAAT SIDEEQQQKS EDENELLNIQ LEDLVGMIQN
101: TQKNILLLNQ ARLQALGRAD KILKEKEALE QKINILEMKL SETGTQSVLS SEVKSDAEGL EFDVVKEENV LLKDDMNFLK AKLIEITETE ESLFKLEKER
201: ALLDASLREL ECTFISAQSD MLKLGPLQQD AWWEKVENLE DLLDSTANQV EHAALTLDGY RDFPDKVEKL KASLGATNVS KFCLYLVDIL QQRLKSVEER
301: FQACSHEMHS QIELYEHSIV EFQDTLSKLI NESEKKSMEH YAEGMPSEFW SRISLLIDGW SLEKKISIND ASMLREMAWK RDNRLREAYL SSRGMEEREL
401: IENFLKMALP GTSSGLHIVH IAAEMAPVAK VGGLADVISG LGKALQKKGH LVEIILPKYD CMQHNQINNL KVLDVVVKSY FEGNMFANKI WTGTVEGLPV
501: YFIEPQHPGK FFWRAQYYGE HDDFKRFSYF SRVALELLYQ SGKKVDIIHC HDWQTAFVAP LYWDVYANLG FNSARICFTC HNFEYQGVAP AQDLAYCGLD
601: VDHLDRPDRM RDNSHGRINV VKGAIVYSNI VTTVSPTYAQ EVRSEGGRGL QDTLKVHSKK FIGILNGIDT DTWNPSTDRF LKVQYSANDL YGKSANKAAL
701: RKQLKLSSTH ASQPLVGCIT RLVPQKGVHL IRHAIYKTAE LGGQFVLLGS SPVQHIQREF EGIADQFQNN SNVRLLLKYD DALSHMIFAA SDMFIVPSMF
801: EPCGLTQMIS MRYGSVPIVR RTGGLNDSVF DFDDETIPME LRNGFTFLKA DEQGFDSALE RAFNYYHRKP EVWKQLVQKD MKIDFSWDTS ASQYEEIYQR
901: AAARARATA

Best Arabidopsis Sequence Match ( AT4G18240.1 )
(BLAST)

0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT

Arabidopsis Description

SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.