Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P27560_001 | Banana | plastid | 75.03 | 58.51 |
| TraesCS1A01G353300.1 | Wheat | cytosol | 42.56 | 45.48 |
| VIT_10s0003g02880.t01 | Wine grape | plastid | 61.66 | 44.71 |
| Zm00001d010821_P002 | Maize | plastid | 54.16 | 43.67 |
| OQU78343 | Sorghum | plastid | 54.02 | 43.56 |
| KRH58438 | Soybean | nucleus | 58.53 | 43.38 |
| Os05t0533600-02 | Rice | plastid | 53.48 | 42.66 |
| Solyc02g071040.2.1 | Tomato | nucleus | 57.71 | 42.26 |
| TraesCS1D01G356900.1 | Wheat | plastid | 52.52 | 42.17 |
| PGSC0003DMT400021444 | Potato | plastid | 57.57 | 42.16 |
| TraesCS1B01G368500.1 | Wheat | plastid | 52.39 | 42.06 |
| KRH42312 | Soybean | nucleus | 56.34 | 41.72 |
| Bra021017.1-P | Field mustard | plastid | 56.34 | 40.49 |
| HORVU1Hr1G080950.5 | Barley | plastid | 52.52 | 40.27 |
| CDX76534 | Canola | plastid | 55.93 | 40.2 |
| CDY08902 | Canola | plastid | 55.93 | 40.2 |
| AT4G18240.1 | Thale cress | plastid | 55.8 | 39.33 |
| Os01t0720600-01 | Rice | plastid | 51.71 | 38.87 |
| GSMUA_Achr1P16610_001 | Banana | plastid | 8.87 | 21.31 |
| GSMUA_Achr1P24640_001 | Banana | cytosol | 5.73 | 21.21 |
| GSMUA_Achr1P08190_001 | Banana | cytosol, plastid | 14.87 | 17.69 |
| GSMUA_Achr9P20780_001 | Banana | plastid | 14.73 | 17.59 |
| GSMUA_Achr1P06140_001 | Banana | plastid | 14.6 | 17.37 |
| GSMUA_Achr3P03290_001 | Banana | plastid | 15.14 | 16.06 |
| GSMUA_Achr5P00700_001 | Banana | plastid | 23.6 | 15.45 |
| GSMUA_Achr1P24650_001 | Banana | mitochondrion | 15.96 | 14.85 |
| GSMUA_Achr6P23190_001 | Banana | cytosol | 14.73 | 14.84 |
| GSMUA_Achr4P10220_001 | Banana | plastid | 15.28 | 14.4 |
| GSMUA_Achr8P24090_001 | Banana | cytosol | 5.87 | 14.29 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, plastid | 4.5 | 14.16 |
| GSMUA_Achr11P... | Banana | plastid | 18.42 | 13.27 |
| GSMUA_Achr1P16620_001 | Banana | cytosol | 2.73 | 8.93 |
| GSMUA_Achr3P16350_001 | Banana | endoplasmic reticulum, vacuole | 2.18 | 7.24 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P16340_001 | EnsemblPlants:GSMUA_Achr3T16340_001 | EnsemblPlantsGene:GSMUA_Achr3G16340_001 | Gene3D:3.40.50.2000 | InterPro:Starch_synth_cat_dom | KEGG:00500+2.4.1.21 |
| ncoils:Coil | PANTHER:PTHR12526 | PANTHER:PTHR12526:SF341 | PFAM:PF08323 | SEG:seg | SUPFAM:SSF53756 |
| UniParc:UPI000296BBC5 | UniProt:M0SF50 | MapMan:3.2.2.4.4 | : | : | : |
Description
starch synthase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G16340_001]
Coordinates
chr3:+:17556713..17564556
Molecular Weight (calculated)
83550.6 Da
IEP (calculated)
7.337
GRAVY (calculated)
-0.537
Length
733 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEACSLVL GRGLSCTKPR ARPPIARLRP SLRVSGKMRN RNLSSQQKRQ QAKRVPSRQF PLNMDTQSHK NNNSEAQESS VAGISRSGEK TISSDDADSD
101: INREMNVAVL TPEETNIVIE NDVRQSHSSI RLEDLISMIR NAEKNILLLN QARIHALKEL DKILSEKEAL QAEINNLEMK LAETDARIKN SVKEGKHGIL
201: DRESPLVLEL NDLRKENEFL KDDIQTLKLK LADVSETEEH VENLQALFDN ARQKLDHPSL DLQQYHELQK KVDKLEASIT ETNMSKFPSE KFHHFDEILQ
301: QKIDILEKRL QESDLEIHSQ IEMFQESVRE FHHTLTKLKE ESEKRSQKSS LENMPWEFWS RLLLIIEGWL LEKKISPNDA KLLREMIWKK DAQIHDAFLA
401: SRSKNEHEKV ATFLKLTYSR KSPGLHIIHI AAEMAPVAKV GGLGDVVSGL GKALQRKGHL VEIILPKYDC MEHDLITDLK ALDVVVESYF DGRTFKNKIW
501: IGTIEGLPVY FIEPHHPAKF FWRGKYYGEH DDFKRFSFFS RAALELLYQA GKKPDIIHCH DWQTAFVAPL YWDIYAAKGF NSARICFTCH NFEYQGTAPA
601: SELASCGLNV HHLNRPDRMQ DNSAHDKVNP VKGAIVFSNI VTTVSPTYAQ EVCTIEGGRG LHETLKSSSK KFVGVLNGID TDAWNPSTDN YIRVQYSADD
701: LQGKAENKDA LRKLLKLSSS KVTQPLVNFF TSN
101: INREMNVAVL TPEETNIVIE NDVRQSHSSI RLEDLISMIR NAEKNILLLN QARIHALKEL DKILSEKEAL QAEINNLEMK LAETDARIKN SVKEGKHGIL
201: DRESPLVLEL NDLRKENEFL KDDIQTLKLK LADVSETEEH VENLQALFDN ARQKLDHPSL DLQQYHELQK KVDKLEASIT ETNMSKFPSE KFHHFDEILQ
301: QKIDILEKRL QESDLEIHSQ IEMFQESVRE FHHTLTKLKE ESEKRSQKSS LENMPWEFWS RLLLIIEGWL LEKKISPNDA KLLREMIWKK DAQIHDAFLA
401: SRSKNEHEKV ATFLKLTYSR KSPGLHIIHI AAEMAPVAKV GGLGDVVSGL GKALQRKGHL VEIILPKYDC MEHDLITDLK ALDVVVESYF DGRTFKNKIW
501: IGTIEGLPVY FIEPHHPAKF FWRGKYYGEH DDFKRFSFFS RAALELLYQA GKKPDIIHCH DWQTAFVAPL YWDIYAAKGF NSARICFTCH NFEYQGTAPA
601: SELASCGLNV HHLNRPDRMQ DNSAHDKVNP VKGAIVFSNI VTTVSPTYAQ EVCTIEGGRG LHETLKSSSK KFVGVLNGID TDAWNPSTDN YIRVQYSADD
701: LQGKAENKDA LRKLLKLSSS KVTQPLVNFF TSN
0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT
Arabidopsis Description
SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.