Factsheet for VIT_10s0003g02880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	16.22	74.21
KRH58438	Soybean	nucleus	69.73	71.28
KRH42312	Soybean	nucleus	68.55	70.0
Solyc02g071040.2.1	Tomato	nucleus	66.27	66.93
Bra021017.1-P	Field mustard	plastid	67.36	66.76
PGSC0003DMT400021444	Potato	plastid	65.97	66.63
CDX76534	Canola	plastid	67.16	66.57
CDY08902	Canola	plastid	66.77	66.18
AT4G18240.1	Thale cress	plastid	67.95	66.06
TraesCS1A01G353300.1	Wheat	cytosol	44.41	65.45
GSMUA_Achr8P27560_001	Banana	plastid	59.35	63.83
GSMUA_Achr3P16340_001	Banana	plastid	44.71	61.66
Os05t0533600-02	Rice	plastid	53.51	58.87
OQU78343	Sorghum	plastid	52.13	57.98
TraesCS1D01G356900.1	Wheat	plastid	52.32	57.94
TraesCS1B01G368500.1	Wheat	plastid	52.32	57.94
Zm00001d010821_P002	Maize	plastid	50.94	56.66
HORVU1Hr1G080950.5	Barley	plastid	52.82	55.86
Os01t0720600-01	Rice	plastid	51.93	53.85
VIT_11s0065g00150.t01	Wine grape	plastid	24.23	40.5
VIT_07s0205g00090.t01	Wine grape	plastid	8.31	38.36
VIT_16s0098g01780.t01	Wine grape	plastid	17.01	27.17
VIT_02s0025g02790.t01	Wine grape	plastid	15.73	26.28
VIT_15s0048g02600.t01	Wine grape	plastid	15.83	26.06
VIT_07s0205g00110.t01	Wine grape	cytosol, nucleus	11.37	23.66
VIT_14s0108g00940.t01	Wine grape	plastid	18.0	22.75
VIT_10s0116g01730.t01	Wine grape	plastid	29.08	19.24

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:100257130	wikigene:100257130	MapMan:3.2.2.4.4	Gene3D:3.40.50.2000	ProteinID:CBI30834
ProteinID:CBI30834.3	ncoils:Coil	UniProt:D7TK12	EMBL:FN595992	GO:GO:0003674	GO:GO:0003824
GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005982	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1
EntrezGene:LOC100257130	wikigene:LOC100257130	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526
PANTHER:PTHR12526:SF341	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGR:TC68633	TIGR:TC68637	TIGRFAMs:TIGR02095
UniParc:UPI000198592F	ArrayExpress:VIT_10s0003g02880	EnsemblPlantsGene:VIT_10s0003g02880	EnsemblPlants:VIT_10s0003g02880.t01	unigene:Vvi.8320	RefSeq:XP_002274716
RefSeq:XP_002274716.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:4955669..5013956

Molecular Weight (calculated)

115176.0 Da

IEP (calculated)

6.471

GRAVY (calculated)

-0.470

Length

1011 amino acids

Sequence
(BLAST)

0001: MAAKLSTCFL SHGWGSLDCK RSNGRFLAPS HRLLPASCKM RHRNFSSQHK RQQTKKVSPD RRPTNSHFQS NGDEDTEPEN ALADGVSSLN QGTTPDDEDA
0101: DVDSHIAIEH INDNPLKHLT VSEEMTPLGI NVKSGEQLSS FQLEDLVGML KNAEKNILLL NQARVRALQD LEKILTEKDA LQGEINILEM RLAETNARIK
0201: VAAQEKIHVE ILEEQLVNLR NELSHRGVTE GSGADMHENW NKAFDGVHSL GKELSLLRTE NVSLKDDILA LKEELSHVQK TDKRVVMLEK ERSFLESALK
0301: ELEFKLVASQ EDVSKLSTLK FECKNLWDRV ENLQVLLDRA TDQADKAILV LEQNQELRKK VDMLEESLEE ANVYKLSSEK MQQYNDLMQK KIKLLEERLD
0401: RSDEEILSYV KLYQESIKEF QDTLNNLKEE SKRRALNEPV DDMPWDFWSR LLLIIDGWLL EKKISANDAK LLREMVWKRD GRIRDAYLVC KDTNEHEAVA
0501: IFLKLTSSPK RSRLHVIHIA AEMAPVAKVG GLGDVVSGLS RALQKKGHLV EIVLPKYDCM QYDRIRDLRV LDMELESYFD GRLFRNKVWV GTVEGLPVYF
0601: IEPHHPSKFF WRGTVYGEHD DFRRFSYFSR AALELLLQAG KKPDIIHCHD WQTAFVAPLY WDLYAPKGLN SARICFTCHN FEYQGTAPAS EMASCGLDVH
0701: HLNRPDRMQD NSAHDRVNPV KGAIVFSNIV TTVSPTYAQE VRTSEGGRGL HSTLNSHSKK FIGILNGIDT DAWDPATDVY LKSQFNANDL QGKAENKEAL
0801: RKHLGLSYAD TRRPLVGCIA RLVPQKGIHL IRHAIYRTLE LGGQFVLLGS SPVPHIQVEF EGIANHFKGD DHIRLILKYD ESLSHSIYAA SDMFLIPSMF
0901: EPCGLTQMIA MRYGSIPIAR KTGGLNDSVF DVDDDTIPLQ FRNGYTFLNP DEQGLNGALE RAFNHYKTNK ESWQKLVKKD MNIDFSWESS ALQYEEIYEK
1001: SVARARATSL V

Best Arabidopsis Sequence Match ( AT4G18240.1 )
(BLAST)

0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT

Arabidopsis Description

SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.