Factsheet for VIT_14s0108g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0019g00340.t01
VIT_16s0098g00600.t01
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT3G01180.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT3G01180.1	VIT_13s0019g00340.t01	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01182	Soybean	cytosol	28.62	86.09
CDY34695	Canola	plastid	14.38	80.42
Bra021486.1-P	Field mustard	endoplasmic reticulum	19.5	73.93
CDY37538	Canola	plastid	59.5	70.31
CDY43274	Canola	plastid	61.25	70.2
PGSC0003DMT400003356	Potato	cytosol	65.38	68.19
Solyc02g088000.2.1	Tomato	nucleus, plastid	65.38	68.1
KRH18473	Soybean	plastid	65.38	67.4
KRG93537	Soybean	plastid	64.88	67.05
Bra039138.1-P	Field mustard	plastid	61.25	63.55
AT3G01180.1	Thale cress	plastid	62.62	63.26
TraesCS6D01G287000.1	Wheat	plastid	50.75	61.24
Os02t0744700-01	Rice	nucleus	51.62	61.0
HORVU6Hr1G075950.4	Barley	plastid	51.25	60.74
TraesCS6B01G336400.1	Wheat	plastid	51.0	60.53
TraesCS6A01G307800.1	Wheat	plastid	50.88	60.21
Zm00001d052263_P001	Maize	plastid	52.25	59.71
EES05532	Sorghum	plastid	52.0	59.09
OQU91730	Sorghum	cytosol	50.5	59.06
Zm00001d018033_P001	Maize	plastid	50.38	58.58
CDY55806	Canola	plastid	40.0	57.87
Os10t0437600-00	Rice	plastid	53.88	57.54
TraesCS1B01G155700.3	Wheat	plastid	53.25	57.34
TraesCS1A01G137200.1	Wheat	plastid	53.5	56.99
TraesCS1D01G138100.2	Wheat	plastid	53.5	56.99
Zm00001d014150_P005	Maize	plastid	52.75	54.52
KXG19644	Sorghum	plastid	52.0	54.03
Zm00001d037234_P005	Maize	plastid	50.88	53.91
KRH15937	Soybean	plastid	8.62	53.08
TraesCS7B01G093800.2	Wheat	plastid	52.88	53.01
TraesCS7A01G189000.1	Wheat	plastid	52.38	52.64
HORVU1Hr1G035960.19	Barley	cytosol, plastid	52.75	52.55
TraesCS7D01G190100.1	Wheat	plastid	52.12	52.19
Os06t0229800-01	Rice	plastid	51.88	51.23
GSMUA_Achr1P24640_001	Banana	cytosol	12.62	51.01
Bra021487.1-P	Field mustard	cytosol	23.5	50.67
HORVU7Hr1G038420.1	Barley	plastid	52.5	49.07
CDY34693	Canola	endoplasmic reticulum, golgi	22.0	44.22
VIT_16s0098g01780.t01	Wine grape	plastid	32.88	41.55
VIT_02s0025g02790.t01	Wine grape	plastid	28.0	37.02
VIT_15s0048g02600.t01	Wine grape	plastid	27.88	36.32
VIT_11s0065g00150.t01	Wine grape	plastid	18.88	24.96
VIT_10s0003g02880.t01	Wine grape	plastid	22.75	18.0
VIT_07s0205g00090.t01	Wine grape	plastid	4.62	16.89
VIT_07s0205g00110.t01	Wine grape	cytosol, nucleus	9.75	16.05
VIT_10s0116g01730.t01	Wine grape	plastid	22.25	11.65

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	ProteinID:CCB47564	ProteinID:CCB47564.1	UniProt:F6H5U3
EMBL:FN595239	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011
GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1	HAMAP:MF_00484	PFAM:PF00534
PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF542	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI0002107EA7	ArrayExpress:VIT_14s0108g00940	EnsemblPlantsGene:VIT_14s0108g00940	EnsemblPlants:VIT_14s0108g00940.t01	:	:

Description

Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:F6H5U3]

Coordinates

chr14:+:29579882..29589606

Molecular Weight (calculated)

89013.4 Da

IEP (calculated)

5.632

GRAVY (calculated)

-0.373

Length

800 amino acids

Sequence
(BLAST)

001: MASVGCVSFV TERAASIWSG RDRRPRFSFP VYRLRMSPGC AISKDSIFGY SREDCVRFSL CSRRQVLGSR GVRARGEGSV EGEDGDRLED AFDATIEKSK
101: KVLAMQRDLL QQNGHEDPKV GVEQDFDVGA ASVSVTFNIS IAERRKLVSS IKSSIINPED NEVSYKGRDS SFPNMDLTST GDSGGDEDYN GGILSGNYVH
201: SNADKVPAAL SSATSRGFGE GEKELGKDLS LENPSLDLEA PKQLKDTSPK TVWSDPLPSF LSKSVETASP KEEKQEDFRE LSSEEVNNEA AVSMGEDVKP
301: PPLAGTNVMN IILVAAECAP WSKTGGLGDV AGALPKALAR RGHRVMVVAP RYGNYAEAQE TGVRKKYKVD GQDMEVTYFQ AYIDGVDFVF IDSHMFRHIE
401: KNIYGGNRMD ILKRMVLFCK AAIEVPWHVP CGGVCYGDGN LVFIANDWHT ALLPVYLKAY YRDNGLMQYT RSALVIHNIA HQGRGPVEDF SYTGLPEHYL
501: DLFKLYDPVG GEHFNIFAAG LKTADRVVTV SHGYAWELKT SEGGWGLHQI INENDWKLRG IVNGIDVKDW NPELDIYLES DGYVNYSLET LHTGKPQCKA
601: ALQKELGLPI REDVPLIGFI GRLDHQKGVD LIAEAVPWMV GQDVQLVMLG TGRNDLEQML RQFESQHHDK IRGWVGFSVK MAHRITAGAD ILLMPSRFEP
701: CGLNQLYAMN YGTIPVVHAV GGLRDTVQPF DPYNESGLGW TFDRAEANRL IHALGNCLLT YRQYKQSWEG LQRRGMMQDL SWDHAAQNYE EVLVAAKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.